View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_44 (Length: 417)
Name: NF6076_low_44
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_44 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 417
Target Start/End: Original strand, 3255647 - 3256068
Alignment:
| Q |
5 |
gagtgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgcggtctttaaaatgacactt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
3255647 |
gagtgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgtggtctttaaaacgacactt |
3255746 |
T |
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| Q |
105 |
gaggcaaaactttttgaagggttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagcgaaggaaggcgtcataatctttggtg |
204 |
Q |
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||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255747 |
gaggcgaaacattttgaggggttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagcgaaggaaggcgtcataatctttggtg |
3255846 |
T |
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| Q |
205 |
gtttcatcttcaaagcaaagaacaggtagtgaacaacatagtttgctccaccgtttcgaaagaactgttgtagtgaaagagagttttgttgggagaaaac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255847 |
gtttcatcttcaaagcaaagaacaggtagtgaacaacatagtttgctccaccgtttcgaaagaactgttgtagtgaaagagagttttgttgggagaaaac |
3255946 |
T |
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| Q |
305 |
aaagaatgtgttgcaataactcatccggtaaatcactgattctatcgaccaaactgtttccatcattattaa---------gtgaaccagaagacctctg |
395 |
Q |
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| T |
3255947 |
aaagaatgtgttgcaataactcatccggtaaatcactgattctatcgaccaaactgtttccatcattattaagtgcctgctgtgaaccagaagacctctg |
3256046 |
T |
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| Q |
396 |
acacaaagtcagatcatcatag |
417 |
Q |
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| T |
3256047 |
acacaaagtcagatcatcatag |
3256068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 7814076 - 7813983
Alignment:
| Q |
262 |
gaaagaactgttgtagtgaaagagagttttgttgggagaaaacaaagaatgtgttgcaataactcatccggtaaatcactgattctatcgacca |
355 |
Q |
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| T |
7814076 |
gaaagtacggttgtagagaaagcgagtttagttgggagaaaagagagaatgtgagacaataactcatccggtaaatcgctgattctatccacca |
7813983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 7871340 - 7871216
Alignment:
| Q |
223 |
agaacaggtagtgaacaacatagtttgctccaccgtttcgaaagaactgttgtagtgaaagagagttttgttgggagaaaacaaagaatgtgttgcaata |
322 |
Q |
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| T |
7871340 |
agaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggttgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaaca |
7871241 |
T |
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| Q |
323 |
actcatccggtaaatcactgattct |
347 |
Q |
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||||||| |||||| ||||||||| |
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| T |
7871240 |
actcatcaggtaaactactgattct |
7871216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 7806822 - 7806893
Alignment:
| Q |
286 |
agttttgttgggagaaaacaaagaatgtgttgcaataactcatccggtaaatcactgattctatcgaccaaa |
357 |
Q |
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| T |
7806822 |
agtttggtttggagaaaagagagaatgtaaagcagtaactcatctggtaaatcacttattctatcgaccaaa |
7806893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 14017785 - 14017655
Alignment:
| Q |
223 |
agaacaggtagtgaacaacatagtttgctccaccgtttcgaaagaactgttgtagtgaaagagagttttgttgggagaaaacaaagaatgtgttgcaata |
322 |
Q |
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|||||||| ||| || | ||||||||| |||||| |||||||||||| | ||||||||||| | |||||||||||||||||||| ||||| |||||| |
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| T |
14017785 |
agaacagggagtaaatagcatagtttggtccaccttttcgaaagaacggatgtagtgaaagcaatatttgttgggagaaaacaaagtatgtgccgcaata |
14017686 |
T |
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| Q |
323 |
actcatccggtaaatcactgattctatcgac |
353 |
Q |
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| T |
14017685 |
actcatctgataaatcgctaattctatcgac |
14017655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 14020483 - 14020277
Alignment:
| Q |
13 |
tgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgcggtctttaaaatgacacttgaggcaaa |
112 |
Q |
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|||| |||||| |||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||| ||| | || || || | ||||||| || |
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| T |
14020483 |
tgaagttcctcgatacaacgctcttttgtggcttctagccattttgtcacattaaatggacgattttgcttgtggtatctataacgaaagttgaggcgaa |
14020384 |
T |
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| Q |
113 |
actttttgaagg----gttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagcgaaggaaggcgtcataatctttggtggttt |
208 |
Q |
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|| |||||| || |||| || |||||| |||||||||||| |||||||| ||||||| |||||||| | ||| | |||||||| ||| || ||| |
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| T |
14020383 |
acattttgagggtttagttggttggttgcatgaggagagagcatgatagtattgacaatgcaacagaagcatggtaagacatcataatcgttgatgattt |
14020284 |
T |
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| Q |
209 |
catcttc |
215 |
Q |
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||||||| |
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| T |
14020283 |
catcttc |
14020277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 14271579 - 14271406
Alignment:
| Q |
6 |
agtgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggac-ccttttgattgcggtctttaaaatgacactt |
104 |
Q |
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|||||| |||| ||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||| || | |||| || | || |
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| T |
14271579 |
agtgaggtgaagttcctcaatacaacgctcttttgtggcttctagccattttgacacattaaatggactatttttgcttgtggcatccaaaacgaaagtt |
14271480 |
T |
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| Q |
105 |
gaggcaaaactttttgaagggttgatttgttgcacgaggagagagcaggatagtatcaacaatgcgacagaagc |
178 |
Q |
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| T |
14271479 |
gaggcgaaacattttgaggggtttgttggttgcacgaagagagagcatgataatattgacaatgtggcagaagc |
14271406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 14017982 - 14017848
Alignment:
| Q |
8 |
tgagatgaacttcctcaatactacgctgttttgaggcttctagccattctgtcacattaaatggacccttttgattgcggtctttaaaatgacacttgag |
107 |
Q |
| |
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||||||||| ||||||||||| | | |||||| |||||||||||||| | ||| |||||||| || ||||| ||||| || |||| |||| ||||| |
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| T |
14017982 |
tgagatgaaattcctcaatacaatgtcgttttgtggcttctagccattttttcaaattaaatgaactattttgcttgcgttccataaagcgacagttgag |
14017883 |
T |
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| Q |
108 |
gcaaaactttttgaagggttgatttgttgcacgag |
142 |
Q |
| |
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| T |
14017882 |
gctaaagattttgaggggttgattggttacacgag |
14017848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 37997616 - 37997736
Alignment:
| Q |
251 |
tccaccgtttcgaaagaactgttgtagtgaaagagagttttgttgggagaaaacaaagaatgtgttgcaataactcatccggtaaatcactgattctatc |
350 |
Q |
| |
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||||||| || |||||||| |||||||| |||| |||||| |||| |||||| | || |||| |||||||||||| |||||||| ||||||||||| |
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| T |
37997616 |
tccaccgctttgaaagaacagttgtagtaaaagcgagtttcattggtagaaaagagagtatgtaacacaataactcatctggtaaatcgctgattctatc |
37997715 |
T |
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| Q |
351 |
gaccaaactgtttccatcatt |
371 |
Q |
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| T |
37997716 |
gtccaaattgttgccaccatt |
37997736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 19317704 - 19317795
Alignment:
| Q |
273 |
tgtagtgaaagagagttttgttgggagaaaacaaagaatgtgttgcaataactcatccggtaaatcactgattctatcgaccaaactgtttc |
364 |
Q |
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|||||| |||| |||||||||||||||||| | ||||||| |||||||||||| |||||||| || |||||||| || ||||||||| |
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| T |
19317704 |
tgtagtaaaagctagttttgttgggagaaaagagagaatgtaaatcaataactcatctggtaaatcgcttattctatccactgaactgtttc |
19317795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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