View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_46 (Length: 406)
Name: NF6076_low_46
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 37650595 - 37650970
Alignment:
| Q |
19 |
tagccctgctgcaaatttatcccttgttgaacaacatataaagaaaattttagcagccacaggtgttgatgtaccaagccttgctataggtaattaatct |
118 |
Q |
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| T |
37650595 |
tagccctgctgcaaatttatcccttgttgaacaacatataaagaaaattttagcagccacaggtgttgatgtaccaagccttgctataggtaattaatct |
37650694 |
T |
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| Q |
119 |
tagccaccactacannnnnnnaaaaagaacaacagcactgacatcattacaaagacccatattcaataggtcggtccttgacaaattaatcaaccagctg |
218 |
Q |
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| T |
37650695 |
tagtcaccactacattttttaaaaaagaacaacagtactgacatcattacaaagacccatattcaataggttggtccttgacaaattaatcaactagctg |
37650794 |
T |
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| Q |
219 |
tattttattacaaaggtccgttatattaacagtattctaatttccctgtaaacagatgaggactatccagctacacttcctttgcctttggcagctttcg |
318 |
Q |
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| T |
37650795 |
tattttattacaaaggtccgttgtattaacagtattctaatttccctgtaaacagatgaggaatatccagctacacttcctttgcctttggcagctttcg |
37650894 |
T |
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| Q |
319 |
taagcctatcaataacatacaaacttgacaaaggcaaaggaagattcctccttctgattggcccaactcttaatgc |
394 |
Q |
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| T |
37650895 |
taagcctatcaataacatacaaacttgacaaaggcaaaggaagattcctccttctgattggcccaactcttaatgc |
37650970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 45666468 - 45666436
Alignment:
| Q |
284 |
tccagctacacttcctttgcctttggcagcttt |
316 |
Q |
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| T |
45666468 |
tccagctacacttcctttgcctttggcggcttt |
45666436 |
T |
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