View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_49 (Length: 402)
Name: NF6076_low_49
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 17057947 - 17057658
Alignment:
| Q |
19 |
tcaagatggtggatggattttgcatgaatatagcctccataattctttgataagcaatcctttggtaagccctaggtttcaatatctatagcgtttgatt |
118 |
Q |
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| T |
17057947 |
tcaagatggtggatggattttgcatgaatatagcctccacaattctttgataagcaatcctttggtaagccctaggttccaatatctatagcgtttgatt |
17057848 |
T |
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| Q |
119 |
cttagccctagttatttggtgcatgatttgatttgannnnnnnnatcttgttttttgcaggacaataattatgttctatgcagatttagaaagaattgca |
218 |
Q |
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| T |
17057847 |
cttagccctagttatttggtgcattatttgattt-----tttttatcttgttttttgcaggacaataattatgttctatgcagatttagaaagaattgca |
17057753 |
T |
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| Q |
219 |
ctcacttacctgtaagcaaaaatatcgttgcacaagataaaccaagaaagatagtcgttcctgaacctgcggcaatcaccatacctgtaagttac |
313 |
Q |
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| T |
17057752 |
ctcacttacctgtaagcaaaaatatcgttgcacaagataaaccaagaaagatagtcgttcctgaacctgcggcaatcaccatacctgtaagttac |
17057658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 17057661 - 17057603
Alignment:
| Q |
334 |
ttaccaaaagatttgatggttttattcctatactgtattattattgtttttctcctttg |
392 |
Q |
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| T |
17057661 |
ttaccaaaagatttgatggttttattcctatactgtattattattgtttttctcgtttg |
17057603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 6044892 - 6044938
Alignment:
| Q |
169 |
ttttttgcaggacaataattatgttctatgcagatttagaaagaatt |
215 |
Q |
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| T |
6044892 |
ttttttgcaggacaacaattatgttctatgcaaattcagaaagaatt |
6044938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 22598487 - 22598442
Alignment:
| Q |
169 |
ttttttgcaggacaataattatgttctatgcagatttagaaagaat |
214 |
Q |
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| T |
22598487 |
ttttttgtaggccaacaattatgttctatgcagatttagaaagaat |
22598442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 22598626 - 22598561
Alignment:
| Q |
23 |
gatggtggatggattttgcatgaatatagcctccataattctttgataagcaatcctttggtaagc |
88 |
Q |
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||||||| |||||| ||||||||||||||||| | || ||||||||||| ||| ||||||||||| |
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| T |
22598626 |
gatggtgaatggatcttgcatgaatatagccttgacaaatctttgataagaaattctttggtaagc |
22598561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 6044671 - 6044738
Alignment:
| Q |
21 |
aagatggtggatggattttgcatgaatatagcctccataattctttgataagcaatcctttggtaagc |
88 |
Q |
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|||||||||||||||| ||||||||||||||||| || | |||||||| | |||| ||| ||||||| |
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| T |
6044671 |
aagatggtggatggatcttgcatgaatatagccttcacatatctttgattaacaatgcttcggtaagc |
6044738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 17637460 - 17637411
Alignment:
| Q |
169 |
ttttttgcaggacaataattatgttctatgcagatttagaaagaattgca |
218 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||||||||||| |
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| T |
17637460 |
ttttttgcaggccaacaattatgttctatgcagatttcaaaagaattgca |
17637411 |
T |
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