View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_5 (Length: 700)
Name: NF6076_low_5
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 324 - 681
Target Start/End: Complemental strand, 12795295 - 12794941
Alignment:
| Q |
324 |
actagtgttatcctcatccccaaatttccttttagactcttcaacttgaacttccttgcacctaaaac-taggtgcttcgtaactcacattttctacagg |
422 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| || |
|
|
| T |
12795295 |
actaatgttatcctcatccccaggtttccttttggagtcttcaacttgaacttccttgcaactaaaacctaggtgcttcataactcacattttctacggg |
12795196 |
T |
|
| Q |
423 |
gcaccc-atttttcttagattttggaactttcttaagttgaactattggacattagggaatttgttgtatgtttactctcttgtccatttgaatttttac |
521 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12795195 |
gcaccccatttttcttagattttggaactttcttaagttgaactattggacattagggaatttgttgtatgtttactctcttgtccatttgaagttttaa |
12795096 |
T |
|
| Q |
522 |
atatcattaattgctcatggagttctaacaatgttcgatgtctcttttcattattatgttcttaaaaattcttgtgaggaaacttaacatcacaaattcc |
621 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
12795095 |
atttcattaattgctcatggagttctaataatgttcgatgtctcttttcattattatgttcttaaaaattcgtgtgagtaaacttaacatcacaaattcc |
12794996 |
T |
|
| Q |
622 |
actggtacaatatttggtcgtgtacattgagcttgggctacagaaggaatagctggttcc |
681 |
Q |
| |
|
| ||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
12794995 |
attggtacagtatttggttgtggacattgagcttgg-----agaaggaatagctggttcc |
12794941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 15439647 - 15439516
Alignment:
| Q |
202 |
tcctttgcatcagtgttatcctccttgagtttccttttagacctttcagctggaactttcatgtacttcaaactaggagctttataactcacattttcta |
301 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| ||||||||||||||||||||| ||| ||| ||| ||| ||||||||| || ||||||||||| |
|
|
| T |
15439647 |
tcctttgcaccagtgttatcca---taagtttccgtttagacctttcagctggaacattcttgtgctttaaaataggagcttcatttttcacattttctc |
15439551 |
T |
|
| Q |
302 |
ccttgaaacaatgatcctttgcactagtgttatcc |
336 |
Q |
| |
|
|||| |||| | |||||||| || |||||||||| |
|
|
| T |
15439550 |
cctttaaaccacaatcctttggaccagtgttatcc |
15439516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 15282825 - 15282874
Alignment:
| Q |
397 |
gcttcgtaactcacattttctacagggcacccatttttcttagattttgg |
446 |
Q |
| |
|
||||| |||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
15282825 |
gcttcataactcacattttctaaagagcaccaatttttcttagattttgg |
15282874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 11781843 - 11781899
Alignment:
| Q |
111 |
cattgacctcaagttttgatgatttcatgaaccttcttctcccattattcatcttca |
167 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
11781843 |
cattgacctcgggttttgatgatttcgcgagccttcttatcccattattcatcttca |
11781899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 11781950 - 11782041
Alignment:
| Q |
205 |
tttgcatcagtgttatcctccttgagtttccttttagacctttcagctggaactttcatgtacttcaaactaggagctttataactcacattttc |
299 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||| | |||||||||||||| | ||||| | || |||||||||| || ||||| |||||| |
|
|
| T |
11781950 |
tttgcatcagtgttatc-tc--tgactttccttttagaaccttcagctggaacttccttgtacctgaatctaggagcttcatgactcatattttc |
11782041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 52417996 - 52417940
Alignment:
| Q |
410 |
cattttctacagggcacccatttttcttagattttggaactttcttaagttgaacta |
466 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
52417996 |
cattttctacagggtttccatttttcttagatttcggaacttttttaggttgaacta |
52417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 52418163 - 52418083
Alignment:
| Q |
230 |
gtttccttttagacctttcagctggaactttcatgtacttcaaactaggagctttataactcacattttctaccttgaaac |
310 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| | | ||| |||| |||||||| || |||| ||||||||||||| |||| |
|
|
| T |
52418163 |
gtttccttttagaattttcagccgaaactttcttctgcttgaaacgaggagcttcatgactctcattttctaccttaaaac |
52418083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University