View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_50 (Length: 399)
Name: NF6076_low_50
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 62 - 389
Target Start/End: Original strand, 1967858 - 1968186
Alignment:
| Q |
62 |
tattggagaaatagaaagaagaatacacacatatttacgtggtttgagtgatgtgacgtaacnnnnnnngagacagaaattgtcaataattcgcaatgat |
161 |
Q |
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| T |
1967858 |
tattggagaaatcgaaagatgaattcacacatattttcgtggtttgagtgatgtgacataacaaaaaaa-agacagaaattgtcaataattcgcaatgat |
1967956 |
T |
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| Q |
162 |
aatacaatgtccaacctattttttctccttaatattttgagctagaatttggcttggtcaattaacataatttaatcaatctcaacnnnnnnn--tatac |
259 |
Q |
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| T |
1967957 |
aatacaatgtcaaacctattttttctccttaatattttgagctagaatttggctaggtcaattaacataatttaatcaatctcaacaaaaaaaaatatac |
1968056 |
T |
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| Q |
260 |
aaattttgtttaatgataaattgatgcaaacatatcaaagaaattgaggattaacaaaatcaaaccagcatatgaatgtgatcatttttggaacttaccc |
359 |
Q |
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| T |
1968057 |
aaactttgtttaatgataaattgatgcaaacatatcaaagaaattgaggattaacaaaatcaaaccaacatatgaatgtgatcatttttggaacttaccc |
1968156 |
T |
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| Q |
360 |
ttatttggtttggatggtgaaggttttgat |
389 |
Q |
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| T |
1968157 |
ttatttggtttggatggtgaaggttttgat |
1968186 |
T |
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