View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_53 (Length: 395)
Name: NF6076_low_53
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 379
Target Start/End: Original strand, 41010522 - 41010889
Alignment:
| Q |
12 |
tatactcactcacatagacaacgtgttaactatttaaattgttgtcgaactttgacgtcatttgtgtgtcaaaatctcattttcctacattaaaatgcca |
111 |
Q |
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| T |
41010522 |
tatagtcacttacatagacaacgtgttaactatttaaattgttgtcgaactttgacgtcatttgtgtgtcaaaatctcattttcctacattaaaatgcca |
41010621 |
T |
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| Q |
112 |
ataaaaaacaaaactctttccttatttagaacaaagaaaacagaacaggaacctcatgttcctgaattaattgattcaaattggcactctacatacatga |
211 |
Q |
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| T |
41010622 |
ataaaaaacaaaactctttccttatttagaacaaagaaaacagaacaggagcctcatgttcctgaattaattgattcaaattggcactctacatacatga |
41010721 |
T |
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| Q |
212 |
cacttaatcaacacatcaatcaactatatatatcagcatagctgttagaacttaaaagctagtataatatatgaactaatgtctcaagtaaaattaaagg |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010722 |
cacttaatcaacacatgaatcaactatatatatcagcatagctgttagaacttaaaagctagtataatatatgaactaatgtctcaagtaaaattaaagg |
41010821 |
T |
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| Q |
312 |
atgataaatttctcatgtcagacacaaacaaacaccttttcattatgtgtggagctagcaaaactaag |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010822 |
atgataaatttctcatgtcagacacaaacaaacaccttttcattatgtgtggagctagcaaaactaag |
41010889 |
T |
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