View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_55 (Length: 393)
Name: NF6076_low_55
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 1200431 - 1200055
Alignment:
| Q |
17 |
accatgcatctagaagtgatgtttcataccttccaaagaggaaaaga--aaagctgtccaggattataccatcagtatgaatcagggctctatcaacaaa |
114 |
Q |
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| T |
1200431 |
accatgcatctagaagtgatgtttcataccttccaaagaggaaaagagaaaagctgtccaggattataccatcagtatgaatcagggctctatcaacaaa |
1200332 |
T |
|
| Q |
115 |
cctaacaaagtttcgtgttcttcgaagcctaacaaattgatcattgattaaatcattttgacga-----gtgtaaggagagcttggtaagggaagtccaa |
209 |
Q |
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| T |
1200331 |
cctaacaaagtttcgtgttcttcgaagcctaacaagttgatcattgattaaatcattttgacgatgatcgtgtaaggagagtttggtgaggaaagtccaa |
1200232 |
T |
|
| Q |
210 |
cggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtgagttatcactggttcagggatcttggtgt |
309 |
Q |
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| T |
1200231 |
cggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtgagttatcactggttcagggatcttggtgt |
1200132 |
T |
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| Q |
310 |
ggaaaatgtcttctt---cttctttaacagcatttgcatttgctatttcggcattcttacggcacattccgcttctt |
383 |
Q |
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| T |
1200131 |
ggaatatgtcttcttctgcttctttaacagcatttgcatttgctatttcggcattcttaaggcacattccgcttctt |
1200055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 1213591 - 1213484
Alignment:
| Q |
179 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
278 |
Q |
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| T |
1213591 |
gtgtaaagagagtttggtgagtgaagtccagcggtgttcccaactcttagataagatagaagtgcgaacagcgtctttggttgggagaaaagagagaatg |
1213492 |
T |
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| Q |
279 |
tgagttat |
286 |
Q |
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|||||||| |
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| T |
1213491 |
tgagttat |
1213484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 580070 - 579952
Alignment:
| Q |
180 |
tgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgt |
279 |
Q |
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| T |
580070 |
tgtaaggagagtttggtgatggaagtccaacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgt |
579971 |
T |
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| Q |
280 |
gagttatcactggttcagg |
298 |
Q |
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| T |
579970 |
gagttatcactggttcagg |
579952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 1079132 - 1079027
Alignment:
| Q |
181 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
280 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
1079132 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
1079033 |
T |
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| Q |
281 |
agttat |
286 |
Q |
| |
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|||||| |
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| T |
1079032 |
agttat |
1079027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 5132674 - 5132779
Alignment:
| Q |
181 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
280 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
5132674 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
5132773 |
T |
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| Q |
281 |
agttat |
286 |
Q |
| |
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|||||| |
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| T |
5132774 |
agttat |
5132779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 8193298 - 8193444
Alignment:
| Q |
179 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
278 |
Q |
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||||| |||||| || || ||||||| ||||||| || |||| |||||||||| | | ||| ||||| || |||| || ||||| |||||||||||| |
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| T |
8193298 |
gtgtatggagagtttagtgagggaagaccaacgggttttccattttttggataaaagaaaagcacgaacagcatcttccgtcggaagaaaagagagaatg |
8193397 |
T |
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| Q |
279 |
tgagttatcactggttcagggatcttggtgtggaaaatgtcttcttc |
325 |
Q |
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|||||||| | | ||||||||| |||| ||| ||| ||||| ||||| |
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| T |
8193398 |
tgagttattagttgttcagggagcttgttgtagaatatgtcatcttc |
8193444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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