View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_58 (Length: 387)
Name: NF6076_low_58
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 42218938 - 42218581
Alignment:
| Q |
1 |
gaactatactagaacacaataactatgcattccataaagatacttaccagaaacccttatcagtaagctaatccagcaaaggcacatgcaaaatggagtt |
100 |
Q |
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| T |
42218938 |
gaactatactagaacccaataattatgcattccataaagatacttaccagaaacccttatcagtaagctaatccagcaaaggcatatgcaaaatag---- |
42218843 |
T |
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| Q |
101 |
gcaaaattgcatttagggagtagggtcatcaaagcacaaaagatattattagaataagaattcatattaaaattgcatacaaggtataatcatccattga |
200 |
Q |
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| T |
42218842 |
---------catttagggagtagggtcatcaaagcacaaaagatactattagaataagaattcacattaaaattgcatacaaggtataatcatccattga |
42218752 |
T |
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| Q |
201 |
ttcctaccgtctgatttgggggttcagattatgaaaaaagttccctctcgcagtgattcaaatttttatttacaaaattgaatgtttgttgtatgaagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42218751 |
ttcctaccgtctgatttgggggttcagattatgaaaaaagttccatctcgcagtgattcaaatttttatttacaaaattgaatgtttgttgtatgaagca |
42218652 |
T |
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| Q |
301 |
gaagattgaatgttcttgagtaatcaaaacgagaaataaagacgattagtagcgcatgcaatgcaactatg |
371 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
42218651 |
gaagattgaaggttcttgagtaatcaaaacgagaaataaagacgagtagtagtgcatgcaatgcaactatg |
42218581 |
T |
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