View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_59 (Length: 386)
Name: NF6076_low_59
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 27814546 - 27814168
Alignment:
| Q |
1 |
gtattacgatgcaaccacaattgtcgatgatgtttgtcgaacgttcctcactagcatgggctggtgtacatgcaaacacactttaacattcaagtaatta |
100 |
Q |
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| T |
27814546 |
gtattacgatgcaaccacaattgacaatgatgtttgttgaacgttcctcactagcgtgggctggtgtacatgcaaagacactttaacattcaagtaatta |
27814447 |
T |
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| Q |
101 |
tggactaaagtttgaagaatatcttggaatgagaaattcctaaannnnnnnaatacggtgctctatttatagattcaaaagagataactgtttgatggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27814446 |
tggactaaagtttgaagaatatcttggaatgagaaattcctacatttttttaatacggtgctctatttatagattcaaaagagataactatttgatggca |
27814347 |
T |
|
| Q |
201 |
ttgagagctcttatggtctttgaacgccttattcagtccttcagtgtctttactggcacacataatctttagattctttgaagagctttattaaatgata |
300 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27814346 |
ttgagaactcttatggtctttgaatgccttattcagtccttcactgtcttgactggcacacatagtctttagattctttgaagagctttattaaatgata |
27814247 |
T |
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| Q |
301 |
ggggaaaaagtgcaattaagcatttacattatttaaattatgtttgattctaaattgattatattgcccattcatctca |
379 |
Q |
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| T |
27814246 |
ggggaaaaagtgcaattaagcctttacattatttaaattatgtttgattctaaattgattatattgcccattcatctca |
27814168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 27816055 - 27815944
Alignment:
| Q |
185 |
taactgtttgatggcattgagagctcttatggtctttgaacgccttattcagtccttcagtgtctttactggcacacataatctttagattctttgaaga |
284 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27816055 |
taactgtttgatggcatggagagctcttatggactttgaacgccttattcaatgcttcattgtctttactggcacacataatctttagattctttgaaga |
27815956 |
T |
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| Q |
285 |
gctttattaaat |
296 |
Q |
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|||||||||||| |
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| T |
27815955 |
gctttattaaat |
27815944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 27816207 - 27816106
Alignment:
| Q |
85 |
aacattcaagtaattatggactaaagtttgaagaatatcttggaatgagaaattcctaaannnnnnnaatacggtgctctatttatagattcaaaagaga |
184 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||| |
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| T |
27816207 |
aacattcaagtaattatggactcatgtttgaagaatatcttggaatgagaaattcgtacatttttttaatatggtgctctatttatagattcaaaagaga |
27816108 |
T |
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| Q |
185 |
ta |
186 |
Q |
| |
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|| |
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| T |
27816107 |
ta |
27816106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27816553 - 27816473
Alignment:
| Q |
1 |
gtattacgatgcaaccacaattgtcgatgatgtttgtcgaacgttcctcactagcatgggctggtgtacatgcaaacacac |
81 |
Q |
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||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| || | |||||||| |||||| |||| |
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| T |
27816553 |
gtattacaatgcaattacaattgtcgatgatgtttgttgaacgttcctcactagcgtgaggtggtgtacctgcaaagacac |
27816473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 38710993 - 38710859
Alignment:
| Q |
8 |
gatgcaaccacaattgtcgatgatgtttgtcgaacgttcctcactagcatgggctggtgtacatgcaaacacactttaacattcaagtaattatggacta |
107 |
Q |
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|||||||| ||||||||||| | |||||| |||||||| |||||||| |||| |||||||| |||||| ||||| |||| |||||||||||| || || |
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| T |
38710993 |
gatgcaactacaattgtcgaaggcgtttgttgaacgttcttcactagcgtgggatggtgtacttgcaaagacactctaacgttcaagtaattaaggtctc |
38710894 |
T |
|
| Q |
108 |
aag----tttgaagaatatcttggaatgagaaatt |
138 |
Q |
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||| ||||| |||||||||||| |||||||| |
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| T |
38710893 |
aaggtgttttgaggaatatcttggaccgagaaatt |
38710859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 43323567 - 43323622
Alignment:
| Q |
323 |
tttacattatttaaattatgtttgattctaaattgattatattgcccattcatctca |
379 |
Q |
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||||||| ||||| ||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
43323567 |
tttacatcatttagattatgttt-attctaaattgattatattgctcattcttctca |
43323622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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