View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_60 (Length: 385)
Name: NF6076_low_60
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 21842859 - 21843133
Alignment:
| Q |
11 |
cagagagaacaacaggaatagcatgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21842859 |
cagagagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
21842958 |
T |
|
| Q |
111 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacac-aaaattcaagaaacaaagagttaccacgaagttggtcacataaggtttggtgaagaccga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21842959 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacacaaaaattcaggaaacaaagagttaccacgaagttggtcacataaggtttggtgaagaccga |
21843058 |
T |
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| Q |
210 |
gactagaaaaggaacatgaagcaaaaacgttgttgttattgtctcctttgttagttccatcatcatgagtagtag |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21843059 |
gactagaaaaggaacatgaagcaaaaacgttgttgttattgtctcctttgttggttccatcatcatgagtagtag |
21843133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 21898722 - 21898996
Alignment:
| Q |
11 |
cagagagaacaacaggaatagcatgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21898722 |
cagagagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
21898821 |
T |
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| Q |
111 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacac-aaaattcaagaaacaaagagttaccacgaagttggtcacataaggtttggtgaagaccga |
209 |
Q |
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| T |
21898822 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacacaaaaattcaggaaacaaagagttaccacgaagttggtcacataaggtttggtgaagaccga |
21898921 |
T |
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| Q |
210 |
gactagaaaaggaacatgaagcaaaaacgttgttgttattgtctcctttgttagttccatcatcatgagtagtag |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21898922 |
gactagaaaaggaacatgaagcaaaaacgttgttgttattgtctcctttgttggttccatcatcatgagtagtag |
21898996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 24910847 - 24910909
Alignment:
| Q |
222 |
aacatgaagcaaaaacgttgttgttattgtctcctttgttagttccatcatcatgagtagtag |
284 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
24910847 |
aacatgaagcaaaaacgttgttgttattgtcttctttgttggttccatcatcatgaatagtag |
24910909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 25359779 - 25359717
Alignment:
| Q |
222 |
aacatgaagcaaaaacgttgttgttattgtctcctttgttagttccatcatcatgagtagtag |
284 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
25359779 |
aacatgaagcaaaaacgttgttgttattgtcttctttgttggttccatcatcatgaatagtag |
25359717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 18889973 - 18890046
Alignment:
| Q |
11 |
cagagagaacaacaggaatagcatgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaa |
84 |
Q |
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|||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||| |||| |
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| T |
18889973 |
cagagagaacaacaggaatagcttgagcttgaactaacgttggaccttcaaaacccattctttctgttcaaaaa |
18890046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 18890121 - 18890190
Alignment:
| Q |
168 |
agttaccacgaagttggtcacataaggtttggtgaagaccgagactagaaaaggaacatgaagcaaaaac |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||| |
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| T |
18890121 |
agttaccacgaagttggtcacataaggtttggtgaagaccaaggctagagaaggaacaagaagcaaaaac |
18890190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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