View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_61 (Length: 382)
Name: NF6076_low_61
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 21102027 - 21102397
Alignment:
| Q |
1 |
ttgcatcaaactcagtttttgcatatcttccaatcgaaacagaaggttttctaactgatcccgaaaccaatgcaccataaaacctcatgtactcatatcc |
100 |
Q |
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| T |
21102027 |
ttgcatcaaactcagtttttgcatatcttccaatcgaaacagatggttttccaactgatcccgaaaccaatgaaccataaaacctcatgtactcatatcc |
21102126 |
T |
|
| Q |
101 |
agcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgagttgcatatttgagcaagttccacttgaaggttgtgatgaatgaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21102127 |
agcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgggttgcatatttgagcaagttccacttgaaggttgtgatgaatgaca |
21102226 |
T |
|
| Q |
201 |
aatttatcaatactagtgtcttcagcaataaatttagcatgagtagtgtcgacatagtaacacaacataagggcaatgagaaatatccatatatacatat |
300 |
Q |
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||||||||| ||||||||| || ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
21102227 |
aatttatcactactagtgtatttagccataaatttatcatgagtagtgtctacatagtaacacaacataagggcatttagaaatatccatatatacatat |
21102326 |
T |
|
| Q |
301 |
atttggaaaaacaatttataaatgaaaaactaaccattaacttcaacaacaagagaggtagaggatgtttg |
371 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21102327 |
atttggaaaaacaaattataaatgaaaaactaaccattaacttcaacaacaagagaggtagaggatgtttg |
21102397 |
T |
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