View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_62 (Length: 378)
Name: NF6076_low_62
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 316
Target Start/End: Original strand, 55169005 - 55169319
Alignment:
| Q |
2 |
caaaggattaatacgacacgagataaaaatctaagagactagtttggatataatttttt-atacaagactaattgcaaggaaattacgaaagatcaaatt |
100 |
Q |
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| T |
55169005 |
caaaggattaatgcgaccctatataaaaatctaagtgactagtttggatataatttttttatataagactagttgcaaggaaattacgaaagatcaaatt |
55169104 |
T |
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| Q |
101 |
ggggtaaagtctaaaaatactcaagaacgatagtgtagcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55169105 |
ggg-taaagtctaaaaatactcaagaacgatagtgtagcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaa |
55169203 |
T |
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| Q |
201 |
tttccacgtttgaggtcggggcggaggtagttgatccaccggagacggcaactcttaccgcaacggagaagaccagcggcttttcggagagagcgccagc |
300 |
Q |
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| T |
55169204 |
tttccacgtttgaggtcggggcgtaggtagttgatccaccggagacggcaactcttaccgcaacggagaagaccagcggcttttgggagagagcgccagc |
55169303 |
T |
|
| Q |
301 |
atccctcaccgtgagc |
316 |
Q |
| |
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| T |
55169304 |
atccctcaccgtgagc |
55169319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 55169319 - 55169355
Alignment:
| Q |
332 |
cagccgctcatcttcttctttgctccatgctcctttg |
368 |
Q |
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| T |
55169319 |
cagccgctcatcttcttctttgctccatgctcctttg |
55169355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 368
Target Start/End: Complemental strand, 27808307 - 27808078
Alignment:
| Q |
139 |
cttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgtttgaggtcggggcggaggtagttgatcca |
238 |
Q |
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||||||||||||| || ||| | |||||||| |||||||||| |||||||| || || || || |||||||| ||||| || | ||| ||||| ||||| |
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| T |
27808307 |
cttacttgttaccaagaagactatggagtttgatgatgagttcatcttcttcttctgtaaagttaccacgtttaaggtctggcctgagatagttaatcca |
27808208 |
T |
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| Q |
239 |
ccggagacggcaactcttaccgcaacggagaagaccagcggcttttcggagagagcgccagcatccctcaccgtgagctctaatataagctatcagccgc |
338 |
Q |
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||||||||| ||||| ||||| || ||||| | ||||| ||||| ||||||| | ||| || || ||||| || || |||||||| | ||| || | |
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| T |
27808207 |
ccggagacgacaacttttaccacatcggagtaagccagctgctttagggagagatctccaacaaccttcaccatgtgccctaatatatgatataagtcta |
27808108 |
T |
|
| Q |
339 |
tcatcttcttctttgctccatgctcctttg |
368 |
Q |
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|||||||||||||| |||| ||||||||| |
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| T |
27808107 |
tcatcttcttcttttgtccaagctcctttg |
27808078 |
T |
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