View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_63 (Length: 378)
Name: NF6076_low_63
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 39019513 - 39019162
Alignment:
| Q |
14 |
agatgtgtatttaagctatttgaaacaccaatttctttggactcagctatgcaaacacttgtggaattgtcattgtgtgaagcgtaatttatattttctt |
113 |
Q |
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| T |
39019513 |
agatgtgtatttaagctatttgaaacaccaatttctttggactcagctatgcaaacacttgtggaattctcattgtgtgaagcgtaatttatattttctt |
39019414 |
T |
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| Q |
114 |
ctcatgcactgtaccagtgagttt---tgcagtctttgttgtgtgagattggagttggaaatgaagaagcaatgaagctcaagattgacaacaaatcaac |
210 |
Q |
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| T |
39019413 |
ctcatgcactgtaccagtgagtttgattgcagtctttgttgtgtgagattggagttggaaatgaagaagcaatgaagctcaagattgacaacaaatcaac |
39019314 |
T |
|
| Q |
211 |
catcaacttagctaaaaaattatatctcttgggaggaggaagcatatagagaccaaattacatttcattcgtcatcaagtaagaaaacaaagaatcaact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39019313 |
catcaacttagctaaaaaattatatctcttgggaggaggaagcatatagagaccaaattacatttcattcgtcatcaagtaagaaaacaaagaatcaact |
39019214 |
T |
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| Q |
311 |
tagcatactgcagaactgaaatgcaaattgcagacatcgtgatcgtgacaaa |
362 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
39019213 |
tagcatactgcagaactgagatgcaaattgcagacatcgtgatcgttacaaa |
39019162 |
T |
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