View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_66 (Length: 369)

Name: NF6076_low_66
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_66
NF6076_low_66
[»] chr8 (3 HSPs)
chr8 (62-234)||(38931899-38932071)
chr8 (252-351)||(38932095-38932193)
chr8 (14-65)||(38931817-38931868)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 38931899 - 38932071
Alignment:
Q  62 atatacactacaaaatataatatataactgatttgtttgcacannnnnnncactttcgtttaattataattgagctaaaaataagaaatagtgaaaaatg 161  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931899 atatacactacaaaatataatatataactgatttgtttgcacatttttttcactttcgtttaattataattgagctaaaaataagaaatagtgaaaaatg 38931998  T
Q  162 gaaaaccaagaaaatcctatgaagctgttgatcatttcattgtctatattaattgattcacactacaaaagcc 234  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38931999 gaaaaccaagaaaattctatgaagctgttgatcttttcattgtctatattaattgattcacactacaaaagcc 38932071  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 38932095 - 38932193
Alignment:
Q  252 aactagagactaaaaacaaccatttaattcctcctttcaagtnnnnnnnggagaaattaattaatccagctaaaatatcaaacccacttcgcattacatc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38932095 aactagagactaaaaacaaccatttaattcctcctttcaagtaaaaaa-ggagaaattaattaatccagctaaaatatcaaacccacttctcattacatc 38932193  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 38931817 - 38931868
Alignment:
Q  14 atcgattcataagtagatagtaaccttaaaactctaatcaacatttaaatat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931817 atcgattcataagtagatagtaaccttaaaactctaatcaacatttaaatat 38931868  T

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