View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_67 (Length: 369)
Name: NF6076_low_67
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 33127565 - 33127908
Alignment:
| Q |
19 |
cagttgctttaaggtaaataataggcaagattacatttgtgatcattttagattagttctttaattt---tttattttctcgaatcattcttttataatt |
115 |
Q |
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| T |
33127565 |
cagttgctttaagataagtaataggcaagattacgtttgtgatcattttggattggttctttaatttatttttattttctcgaatcattcttttatattt |
33127664 |
T |
|
| Q |
116 |
caatatgtttgcgttgttaacatttttaacaagttgttnnnnnnnncatatgtgacatcttaatattgaataaattaacataccgtaagatttttccatt |
215 |
Q |
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| T |
33127665 |
caatatgtttgcgttgttaacatttttaacaagttgttaaaaaaa-catatgtgacatcttaatattgaataaattaacatactgtaagatttttccatt |
33127763 |
T |
|
| Q |
216 |
tctttctcctctctcttcttctttaaatgtaacattttaaatttaaaatcattaaaactatagtacttaattttcgcaggagtgagtagtgacttcattc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127764 |
tctttctcctctctcttcttctttaaatgtaacattttaaatttaaaatcattaaaactatagtacttaattttcgcaggagtgagtagtgacttcattc |
33127863 |
T |
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| Q |
316 |
aggaggagcaacgattcgaatttactaataatgagtaattcatct |
360 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
33127864 |
aggaggagcaatgattcgaatttacgaataatgagtaattcatct |
33127908 |
T |
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