View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_69 (Length: 365)
Name: NF6076_low_69
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 38042248 - 38042591
Alignment:
| Q |
6 |
agaagcaaaggacataagagtaacaataagatcagaaaaagcatcgagaataaacttgtgagtgttgttgggattaatagcgagatagctaagaagaagc |
105 |
Q |
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| T |
38042248 |
agaagaaaaggacatgagagtaacaataagatcagaaaaagcatcgagaataaacttgtgagtgttgttgggattaatagcgagatagctaagaagaagc |
38042347 |
T |
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| Q |
106 |
tcgtgtaaggtttcccaattggacttcacgtccttcatcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccg |
205 |
Q |
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| T |
38042348 |
tcgtgtaaggtttcccaattggacttcacgtccttcatcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccg |
38042447 |
T |
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| Q |
206 |
gtgaatatgttggcaccgccacacttccgttgaaaactgtcttctttttgttagaatcatttgccggtgctggcacagtggaaaccaacaatgatgagga |
305 |
Q |
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| T |
38042448 |
gtgaatatgttggcaccgccacacttccgttgaaaactgtcttctttttgttagaatcatttgccggtgctggcacagtggaaaccaacaatgatgagga |
38042547 |
T |
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| Q |
306 |
agaggagaatgaggatggggttgattcaactatggagttggaac |
349 |
Q |
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| T |
38042548 |
agaggagaatgaggatggggttgattcaactatggagttggaac |
38042591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 31980863 - 31980765
Alignment:
| Q |
141 |
catcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccggtgaatatgttggcaccgccacacttccgttgaa |
239 |
Q |
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| T |
31980863 |
catcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataaggatcgggcgagtaggttggtactgccacacttccattgaa |
31980765 |
T |
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