View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_70 (Length: 363)
Name: NF6076_low_70
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 32566740 - 32567092
Alignment:
| Q |
1 |
ttgatggctaagagaaatgaatttcatagaaaacacaagccctgaaacaggtaaccatggaaaaagaaaccaatggtgctgcttgaaagcaacaccttag |
100 |
Q |
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| T |
32566740 |
ttgatggctaagagaaatgaatttcatagaaaacacaagcactgaaacaggtaaccatggacaaagaaaccaatggtgctgcttgaaagcaacaccttag |
32566839 |
T |
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| Q |
101 |
aaaattatgaattgtaggttctgaaagggaacatcttctttgccctttgtgacaacagaattttcacaaacggtgctgatatattacaagttattcatga |
200 |
Q |
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| T |
32566840 |
aaaattatgaattgtaggttctgaaagggaacatcttctttgccctttgtgacaacaggattttcacaaacggtgctgatatattacaagttattcatga |
32566939 |
T |
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| Q |
201 |
attttggggtgaagcaaatagctgttttaagtccatatacacttgagactttcaccaccatattctacatcatgatcactgaggaaagaagnnnnnnnng |
300 |
Q |
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| T |
32566940 |
attttggggtgaagcaaatagctgttttaagtccatatacacttgagactttcaccaccatattctacatcatgatcactgaggaaagaagaaaaaaaag |
32567039 |
T |
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| Q |
301 |
aacctacaactacgaaatccaaagtccaaaccattacttcacagattgttcat |
353 |
Q |
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| T |
32567040 |
aacctacaactacgaaatccaaagtccaaaccattacttcacagattgttcat |
32567092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 1756937 - 1756901
Alignment:
| Q |
51 |
gtaaccatggaaaaagaaaccaatggtgctgcttgaa |
87 |
Q |
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| T |
1756937 |
gtaaccatggataaagaaaccaatggtgctgcttgaa |
1756901 |
T |
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