View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_71 (Length: 362)
Name: NF6076_low_71
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 52050310 - 52050459
Alignment:
| Q |
1 |
agtcacatgaaatgttcccattcagctaatatttattttcataatacagattaaatcctagtgcagctattcttttaatgcggataaaatgaaacacaag |
100 |
Q |
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| T |
52050310 |
agtcacatgaaatgttcccattcagctaatatttattttcataatatagattaaatcctagtgcagctattcttttaatgcggataaaatgaaacgcaag |
52050409 |
T |
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| Q |
101 |
aactgtgtaaaagtcattgaaaacctcgtatcagagagaattttggtaac |
150 |
Q |
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| T |
52050410 |
aactgtgtaaaagtcattgaaaacctcgtatcagagagaattttggtaac |
52050459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 200 - 347
Target Start/End: Original strand, 52050503 - 52050650
Alignment:
| Q |
200 |
caaaccaagaaccaggatgaattgtaacatcaaaaacaggaaaagattgtggaagtccattgttctttgttcaacctcaatctttctctttctatgaaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52050503 |
caaaccaagaaccaggatgaattgtaacatcaaaaacaggaaaagattgtggaagtccattgttctttgttcaaccgtaatctttctctttctatgaaaa |
52050602 |
T |
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| Q |
300 |
ctttgcttgacgacaaatattactttcagattctttgaattaatttgt |
347 |
Q |
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| T |
52050603 |
ctttgcttgacgacaaatattactttcagattctttgaattaatttgt |
52050650 |
T |
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