View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_72 (Length: 362)
Name: NF6076_low_72
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 34 - 349
Target Start/End: Original strand, 22611984 - 22612301
Alignment:
| Q |
34 |
aaacttacttattttagatacttaaccattgtctggaacacagattatccttctccataaactatgcaaccaacccacgtagaaatctctacactatacc |
133 |
Q |
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| T |
22611984 |
aaacttacttattttaaatacttaaccattgtctgagacactgattatcattctccataaactatgcaaccaacccacgtagaaatctctacactatacc |
22612083 |
T |
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| Q |
134 |
taccactatattgcaaatagagaaggaaggaacacgttgatat--atatgataagaatcacacctaaatttcatactgacaattattaaataaaagattt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22612084 |
taccactatattgcaaatagagaaggaaggaacacgttgatatatatatgataagaatcacacctaaatttcatactgacaattattaaatagaagattt |
22612183 |
T |
|
| Q |
232 |
ttaaatgaatgaaaacaatatatacttgtggaggaaattgaatttggcaatcatgaaaatgacatatttgtgagaccaataaaaagtcagagctgcaagc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22612184 |
ttaaatgaatgaaaacaatatatacttgtggaggaaattgaatttggcaatcatgaaaatgacatatttgtgagaccaataaaaagtcagagctgcaagc |
22612283 |
T |
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| Q |
332 |
atggagcttgaagtagta |
349 |
Q |
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|||||||||||||||||| |
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| T |
22612284 |
atggagcttgaagtagta |
22612301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 52860871 - 52860834
Alignment:
| Q |
30 |
attaaaacttacttattttagatacttaaccattgtct |
67 |
Q |
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||||||| ||||||||||||||| |||||||||||||| |
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| T |
52860871 |
attaaaatttacttattttagatgcttaaccattgtct |
52860834 |
T |
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