View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_73 (Length: 361)
Name: NF6076_low_73
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_73 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 51728761 - 51729085
Alignment:
| Q |
24 |
tatcccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaatt |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51728761 |
tatcccacgaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaatt |
51728860 |
T |
|
| Q |
124 |
tcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51728861 |
tcaaagcgcgaaatgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaat |
51728960 |
T |
|
| Q |
224 |
ggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaatttgattccttcattacaaaac |
323 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51728961 |
ggttttgatctttttctttccattaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaattcgattccttcattacaaaac |
51729060 |
T |
|
| Q |
324 |
caccactttgatgcttttttaagta |
348 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51729061 |
caccactttgatgcttttttaagta |
51729085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 51723519 - 51723591
Alignment:
| Q |
28 |
ccacaaaagccatgtttggaatcaatggatggatggttcctctatcatgattagcataaatcaagctattagt |
100 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| |||| | |||| |||||| || | ||||||||||||| |
|
|
| T |
51723519 |
ccacaaaagccttgtttgaaatcaatggatggatagttctccgatcacgattagaatgactcaagctattagt |
51723591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 19056891 - 19056734
Alignment:
| Q |
186 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
285 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||||| | || ||||| || || | | |
|
|
| T |
19056891 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19056792 |
T |
|
| Q |
286 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
343 |
Q |
| |
|
|||||| || ||||||| |||||| |||| ||||| ||||||||||||||| |||| |
|
|
| T |
19056791 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19056734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 19188308 - 19188465
Alignment:
| Q |
186 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
285 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||||| | || ||||| || || | | |
|
|
| T |
19188308 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19188407 |
T |
|
| Q |
286 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
343 |
Q |
| |
|
|||||| || ||||||| |||||| |||| ||||| ||||||||||||||| |||| |
|
|
| T |
19188408 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19188465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 19059566 - 19059514
Alignment:
| Q |
20 |
aacatatcccacaaaagccatgtttggaatcaatggatggatggttcctctat |
72 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
19059566 |
aacataacccacaaaggccatgtttggaatcaatggatgaacagttcctctat |
19059514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University