View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_74 (Length: 355)
Name: NF6076_low_74
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_74 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 10479271 - 10479621
Alignment:
| Q |
1 |
accaattttttctaatacgagtgaaatatgcaatatgtgtttatacttagagatggaatgagatattatttgatttatattttcaaacatttaattagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479271 |
accaattttttctaatacgagtgaaatatgcaatatgtgtttatacttagagatgaagtgagatattatttgatttatattttcaaacatttaattagaa |
10479370 |
T |
|
| Q |
101 |
aaattagcatggtttggaaattacaaacaacttcttggttgcctaatatccaaattgaatgtataaaaagaggggtgtgtggatagcaaaaacaagagca |
200 |
Q |
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| T |
10479371 |
aaattagcatggtttggaaattacaaacaacttcttggttgcccaatatccaaattgaatgtataaaaagaggggtgtgtggatagcaaaaacaagagca |
10479470 |
T |
|
| Q |
201 |
cataagctaagcccacttaaatataggcccaatattcaggtcaccgtcttcttc---ccacaatggtgaacgcgaatcaaaacccaaaaccctgaaacgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479471 |
cataagctaagcccacttaaatataggcccaatattcaggtcaccgtcttcttcacacaacaatggtgaacgcgaatcaaaacccaaaaccctgaaacgg |
10479570 |
T |
|
| Q |
298 |
ttcgcataacattgcaaattctcaaaaccctatacccccaaattcatctca |
348 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10479571 |
ttcgcataacattgcaaattctcaaaaccctaaacccccaaattcatctca |
10479621 |
T |
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