View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_78 (Length: 350)
Name: NF6076_low_78
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 2806379 - 2806059
Alignment:
| Q |
13 |
aatatcaacatacagtatataccaa-taagcatgaaatcaaatacattgtaaataaaaattaaaactttttcaaatttcaaaccattaatagcaatttaa |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2806379 |
aatatcaacatacagtatataccaagtaagcatgaaatcaaatacattgtaaataaaaattaaaactttttcaaatttcaaaccattaatagcaatttaa |
2806280 |
T |
|
| Q |
112 |
gagagtttaagnnnnnnnngggtaggatttaattatccaaataatgagaaatagcaaaaaacactaacaatggcctnnnnnnnnnccacaaaacattatt |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2806279 |
gagagtttaagaaaaaa--gggtaggatttaattatccaaataatgagaaatagcaaaaaacactaacaatggcctaaaaaaaaaccacaaaacattatt |
2806182 |
T |
|
| Q |
212 |
tgcatttagttaaagtaatgatttttaaatttgaaatgatgaagagagagagaatgtgcctggagaggaagcagatacagcgattgatgtaagaattggt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2806181 |
tgcatttagttaaagtaatgatttttaaatttgaaatgatgaagagagagagaatgtgcctggagaggaagcagatacagcgattgatgtaagaattggt |
2806082 |
T |
|
| Q |
312 |
gaaatttgaggagagggaacaag |
334 |
Q |
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||||||||||||||||||||||| |
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| T |
2806081 |
gaaatttgaggagagggaacaag |
2806059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 4270034 - 4269781
Alignment:
| Q |
13 |
aatatcaacatacagtatataccaa-taagcatgaaatcaaatacattgtaaataaaaattaaaactttttcaaatttcaaaccattaatagcaatttaa |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270034 |
aatatcaacatacagtatataccaagtaagcatgaaatcaaatacattgtaaataaaaattaaaactttttcaaatttcaaaccattaatagcaatttaa |
4269935 |
T |
|
| Q |
112 |
gagagtttaagnnnnnnnngggtaggatttaattatccaaataatgagaaatagcaaaaaacactaacaatggcct---nnnnnnnnnccacaaaacatt |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4269934 |
gagagtttaag--aaaaaagggtaggatttaattatccaaataatgagaaatagcaaaaaacactaacaatggcctaaaaaaaaaaaaccacaaaacatt |
4269837 |
T |
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| Q |
209 |
atttgcatttagttaaagtaatgatttttaaatttgaaatgatgaagagagagaga |
264 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
4269836 |
atttgcatttagttaaagtaatgattttttaatttgaattgatggagagagagaga |
4269781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 4269733 - 4269653
Alignment:
| Q |
254 |
agagagagagaatgtgcctggagaggaagcagatacagcgattgatgtaagaattggtgaaatttgaggagagggaacaag |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4269733 |
agagagagagaatgtgcctggagaggaagcagatacagcgattgatgtaagaattggtgaaatttgaggagagggaacaag |
4269653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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