View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_81 (Length: 340)
Name: NF6076_low_81
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 25 - 325
Target Start/End: Original strand, 5763312 - 5763612
Alignment:
| Q |
25 |
tgatgaacatgaaagagataacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggc |
124 |
Q |
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| T |
5763312 |
tgatgaacatgaaagagataacaaagccaaccagaaagtttcattccacaaactctttacttttgctgatagtcttgatgtaacattgatgatcattggc |
5763411 |
T |
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| Q |
125 |
accatctctgccgttgctaatggtatgatacagcctatcatgactctcattcttggcaaaatcatcaatacctttggctcaacagatcctcaccacatag |
224 |
Q |
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| T |
5763412 |
accatctctgccgttgctaatggtatgacacagcctatcatgactctcattcttggcaaaatcatcaatacctttggctcaatagatcctcaccacatag |
5763511 |
T |
|
| Q |
225 |
tcaaagaagtttctaaggtgctttattgttcccctttagctagctatttgtattatagagattgatatatttttataatgttttcttactagttcattca |
324 |
Q |
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| T |
5763512 |
tcaaagaagtttctaaggtgctttattgttcccctttagctagctatttgtattatagagattgatatatttttataatgttttcttactagttcattca |
5763611 |
T |
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| Q |
325 |
t |
325 |
Q |
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| |
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| T |
5763612 |
t |
5763612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 5835375 - 5835266
Alignment:
| Q |
38 |
agagataacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggcaccatctctgccg |
137 |
Q |
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| T |
5835375 |
agagataacaaaacaaaacaaaaagttccattctacatgcttttcaattttgctgatcatcttgatgtaacgttgatgatcattggcactatctctgctg |
5835276 |
T |
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| Q |
138 |
ttgctaatgg |
147 |
Q |
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| |||||||| |
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| T |
5835275 |
tggctaatgg |
5835266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 5820435 - 5820619
Alignment:
| Q |
59 |
aaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggcaccatctctgccgttgctaatggtatgata-cag |
157 |
Q |
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|||||| | ||| ||||||| |||| ||||||||| | ||||| || | |||||||||||||| ||| | |||||| |||||||| || || ||| |
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| T |
5820435 |
aaagttcctttctacaaactattcaattttgctgacaaacttgacgtgattttgatgatcattggtttcatatgtgccgtagctaatgg-attatctcag |
5820533 |
T |
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| Q |
158 |
cctatcatgactctcattcttggcaaaatcatcaatacctttggctcaacagatcc-tcaccacatagtcaaagaagtttctaaggt |
243 |
Q |
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| T |
5820534 |
cctcttatgacacttatttttggaaaactcatcaacacctttggctccaccgatccatcac-acattgtcaaagaagtttctaaggt |
5820619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 29332842 - 29332738
Alignment:
| Q |
43 |
taacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggcaccatctctgccgttgct |
142 |
Q |
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||||||||||||||| | |||| ||||| |||| ||||| | |||||||||| ||||||| ||||| ||||||||||||||||| || |||||| | ||| |
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| T |
29332842 |
taacaaagccaaccaaatagttccattctacaagctctttagttttgctgatcgtcttgacgtaactttgatgatcattggcactatttctgccatggct |
29332743 |
T |
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| Q |
143 |
aatgg |
147 |
Q |
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||||| |
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| T |
29332742 |
aatgg |
29332738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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