View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_83 (Length: 333)
Name: NF6076_low_83
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_83 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 15686907 - 15687224
Alignment:
| Q |
16 |
gtactaaaaaatgtctagttataaatataaatttctacctgcatcatgtcaccgaggttaacgaccaaagcgccaggaatcggtgtgacatcaacccact |
115 |
Q |
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| T |
15686907 |
gtactaaaaaatgtctagttataaatataaatttctacctgcatcatgtcaccgaggttaacgaccaaagcgccaggaatcggtgtgacatcaacccact |
15687006 |
T |
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| Q |
116 |
gattttcatgggaaacttggaggccaccaagttgatcttgtaagagaacagtgaggaagctactgtcagaatgagcactagcaccaatagtcaattcagg |
215 |
Q |
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| T |
15687007 |
gattttcatggaaaacttggaggccaccaagttgatcttgtaagagaacagtgaggaagctactgtcagaatgagcactagcaccaatagtcaattcagg |
15687106 |
T |
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| Q |
216 |
ctcagggcaaggtgggtaataatgggaaattaggaaaaggccttctacacaatctatgtctttaaggtaattggaattgaggcctaatgcttcagaaagc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15687107 |
ctcagggcaaggtgggtaataatgggaaattaggaaaaggccttctacacaatctatgtctttaaggtaattggaattgaggcctaatgcttctgaaagc |
15687206 |
T |
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| Q |
316 |
aattcaaataaaatcgtc |
333 |
Q |
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| T |
15687207 |
aattcaaataaaatcgtc |
15687224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 44 - 322
Target Start/End: Original strand, 15681095 - 15681373
Alignment:
| Q |
44 |
aaatttctacctgcatcatgtcaccgaggttaacgaccaaagcgccaggaatcggtgtgacatcaacccactgattttcatgggaaacttggaggccacc |
143 |
Q |
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| T |
15681095 |
aaatttttacctgcatcatgtcaccgaggttaatgaccagagcgccaggaatcggtgtgacatcaacccactgatttccatggaaaacttggaggccacc |
15681194 |
T |
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| Q |
144 |
aagttgatcttgtaagagaacagtgaggaagctactgtcagaatgagcactagcaccaatagtcaattcaggctcagggcaaggtgggtaataatgggaa |
243 |
Q |
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| T |
15681195 |
aagttgatcttgtaagagaacagtaaagaaactactgtcagaatgagcacttgtgccaaaagtgagttctggctcagggcaaggtgggtaataatgggaa |
15681294 |
T |
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| Q |
244 |
attaggaaaaggccttctacacaatctatgtctttaaggtaattggaattgaggcctaatgcttcagaaagcaattcaa |
322 |
Q |
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| T |
15681295 |
attaggaaaagtccttctgcacaatctatgtctttaaggtaattggaattaaggcctaatgcttcagaaagcaattcaa |
15681373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 3193291 - 3193335
Alignment:
| Q |
279 |
aaggtaattggaattgaggcctaatgcttcagaaagcaattcaaa |
323 |
Q |
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| T |
3193291 |
aaggtaactggaattgaggcctaatgcatcataaagcaattcaaa |
3193335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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