View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_89 (Length: 322)
Name: NF6076_low_89
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 313
Target Start/End: Complemental strand, 54733543 - 54733262
Alignment:
| Q |
32 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcacacaaattacatacacagattagctag |
131 |
Q |
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| T |
54733543 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcaaacaaattacatacacagattagctag |
54733444 |
T |
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| Q |
132 |
gaataaatatggtttgtacttcatttattcgtagcttctgttgtcttgcaatgaatgcctccacggtgcgacgaaattcgtcgctgctcattccatcttc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54733443 |
gaataaatatggtttgtacttcatttattcgtagcttccgttgtcttgcaatgaatgcctccaccgtgcgacgaaattcgtcgctgctcattccatcttc |
54733344 |
T |
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| Q |
232 |
gggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54733343 |
aggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgc |
54733262 |
T |
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