View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_91 (Length: 322)
Name: NF6076_low_91
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40056630 - 40056936
Alignment:
| Q |
1 |
caagttccaacgttaattaaaaacaactttgttctgcaatgcaaatttttaagtgaaaagacgacaaatcaacaatgtgaacgatggtgagaaccatgac |
100 |
Q |
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| T |
40056630 |
caagttccaacgttaattaaaaacaactttgttctgcaatgcatatttttaagtgaac-gacgacaaatcaacaatgtgaacgatggtgagaaccatgac |
40056728 |
T |
|
| Q |
101 |
atgagcgataggatagtaataactacgacaaggaaatgatgagtgaagaagatggatcaatatgtgtgaaaattaacggaaaagcaacggtgttaacaag |
200 |
Q |
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| T |
40056729 |
atgagcgataggatagtaataacaacgacaaggaaaggatgagtgaggaagatggatcaatatgtgtgaaaattaacgaaaaagcaacggtgttaacaag |
40056828 |
T |
|
| Q |
201 |
taagtgatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcttggtgtcattttcataaatcttagagga |
300 |
Q |
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| T |
40056829 |
taagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagtttttaaactataggagatcttggtgtcattttcataaatcttagagga |
40056928 |
T |
|
| Q |
301 |
agtgaatg |
308 |
Q |
| |
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| T |
40056929 |
agtgaatg |
40056936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 41714166 - 41714118
Alignment:
| Q |
235 |
aaggagataagtgtaagttttaaaactataggagatcttggtgtcattt |
283 |
Q |
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| T |
41714166 |
aaggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt |
41714118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 39484625 - 39484360
Alignment:
| Q |
21 |
aaacaactttgttctgcaatgcaaatttttaagtgaaaagacgacaa-atcaacaatgtgaacgatggtgagaaccatgacatgagcgataggatagtaa |
119 |
Q |
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| T |
39484625 |
aaacaactttgtccttcaatgcatattcttaagtgaag-gacaacgagatcaacaatgtgaatgatggtgagagccatgacatgagcgatagcatagtaa |
39484527 |
T |
|
| Q |
120 |
taactacgacaaggaaatgatgagtgaagaagatggatcaatatgtgtgaaaattaacggaaaagcaacggtgttaacaagtaagtgatgtgtttgtcta |
219 |
Q |
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| T |
39484526 |
taacaatgacgaggaaa-gacgagataggaagatggatcaatatctgtgaaaattaacggaaaagtaacggtgttaataaataagggatgtgtttatata |
39484428 |
T |
|
| Q |
220 |
tttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcttggtgtcattttcat |
287 |
Q |
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| T |
39484427 |
tttcatgagaacttgagggaggtaagtgtaagttttaaaattagtggggatattggtgtcattttcat |
39484360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 35145866 - 35145621
Alignment:
| Q |
16 |
attaaaaacaactttgttctgcaatgcaaatttttaagtgaaaagacgacaa-atcaacaatgtgaacgatggtgagaaccatgacatgagcgataggat |
114 |
Q |
| |
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||||||||||||||||| || ||||||| |||||||||| ||| || || | |||||| ||||| | || ||||||| | |||||||||||||| | | |
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| T |
35145866 |
attaaaaacaactttgtccttcaatgcatatttttaagt-aaaggatgaagagatcaacgatgtgtaggagggtgagatcaatgacatgagcgatggcag |
35145768 |
T |
|
| Q |
115 |
agtaataactacgacaaggaaatgatgagtgaagaagatggatcaatatgtgtgaaaattaacggaaaagcaacggtgttaacaagtaagtgatgtgttt |
214 |
Q |
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||||| || ||| | | || || |||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
35145767 |
agtaacgacaacgtcgatgagg-gacgagtgaggaagatgaatcaatatgtgtgaaaattaacggaaaagtaactgtgttaacaagtaagggatgtgttt |
35145669 |
T |
|
| Q |
215 |
gtctatttcatgagaattcgaaggagataagtgtaagttttaaaacta |
262 |
Q |
| |
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|||||||| ||||||| |||| |||| | ||||||||||||||||||| |
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| T |
35145668 |
gtctattttatgagaactcgagggaggttagtgtaagttttaaaacta |
35145621 |
T |
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