View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_95 (Length: 313)

Name: NF6076_low_95
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_95
NF6076_low_95
[»] chr2 (1 HSPs)
chr2 (17-307)||(10093431-10093721)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 10093431 - 10093721
Alignment:
Q  17 acatttcattaggtataccaaccataacctgaatggcactacccataagtgctttaagtatagcaggatcagcttcaaaaagtttcacttttgagatctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10093431 acatttcattaggtataccaaccataacctgaatggcactacccataagtgctttaagtatagcaggatcagcttcaaaaagtttgacttttgagatctt 10093530  T
Q  117 gttatctctcaaaagattaaccactgtagagggtttcaatctgtgtgaagatagtgtgccccagtttacacctatggctgattctgcagccataggaaga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10093531 gttatctctcaaaagattaaccactgtagagggtttcaatctgtgtgaagatagtgtgccccagtttacacctatggctgattctgaagccataggaaga 10093630  T
Q  217 gaaagacaacataggaataagagggaaaagagaagtgttaatgttggttgtaacatagagagatttagtaacagtttgtgtctgtgctgct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10093631 gaaagacaacataggaataagagggaaaagagaagtgttaatgttggttgtaacatagagagatttagtaacagtttgtgtttgtgttgct 10093721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University