View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_98 (Length: 308)
Name: NF6076_low_98
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_98 |
 | |
|
| [»] scaffold0202 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 16146708 - 16146517
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16146708 |
accaacaacactcaatctacctcagaaaaaattggaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
16146609 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16146608 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
16146517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 20746053 - 20746239
Alignment:
| Q |
104 |
caacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggctttagcac |
203 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20746053 |
caacactcaatctacctcagaacaaattggaaattggtgcccttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcac |
20746152 |
T |
|
| Q |
204 |
caaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20746153 |
caaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
20746239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 27129473 - 27129282
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |
|
|
| T |
27129473 |
accaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggattt |
27129374 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27129373 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
27129282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 12260913 - 12261107
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaa---ttgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggc |
195 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
12260913 |
accaacaacactcaatctacctcagaaaaaaaaattggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattgga |
12261012 |
T |
|
| Q |
196 |
tttagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12261013 |
tttagcaccaaagtcacttttcttgataattaatttttggatttttattgctggattatttcaactgctagttgtagttgttgtggatgttttga |
12261107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 103 - 290
Target Start/End: Original strand, 19298000 - 19298187
Alignment:
| Q |
103 |
acaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggctttagca |
202 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
19298000 |
acaacactcaatctacctcagaaaaaattggaaattggtgcccttcttcaaccttggattcaattgggtgttgtgctagttatcctaattggatttagca |
19298099 |
T |
|
| Q |
203 |
ccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19298100 |
ccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
19298187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 28190078 - 28189887
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |
|
|
| T |
28190078 |
accaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggattt |
28189979 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28189978 |
agcaccaaaatcacttttcttgataattaatttttgggtttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
28189887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 20686260 - 20686069
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
20686260 |
accaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttgaattcaattgggcattgtgctagttatcccaattgaattt |
20686161 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
20686160 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgctagttgtagttgttgtgaatgttttga |
20686069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 8029433 - 8029626
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaatt--gaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggct |
196 |
Q |
| |
|
||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
8029433 |
accaacaacactcaatctacctcagaattttttttggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggat |
8029532 |
T |
|
| Q |
197 |
ttagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8029533 |
ttagcaccaaagtcacttttcttgataattaatttttggatttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
8029626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 40468513 - 40468708
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaa-ttgaaaattggtgccattcttcaaccttggattcaattgggtgttgtg---ctagttatcccaattgg |
194 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
40468513 |
accaacaacactcaatctacctcagaaaaaaattggaaaatggtgccgttattcaaccttggattcaattgggtgttgtggtgctagttaaccaaattgg |
40468612 |
T |
|
| Q |
195 |
ctttagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40468613 |
atttagcaccaaaatcacttttcttgataattaatttttggatttttattgttggattttttcaactgctagttgtagttgttgtggatgttttga |
40468708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 30766276 - 30766085
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |
|
|
| T |
30766276 |
accaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggattt |
30766177 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30766176 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
30766085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 17279033 - 17278840
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaatt--gaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggct |
196 |
Q |
| |
|
||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
17279033 |
accaacaacactcaatctacctcagaattttttttggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggat |
17278934 |
T |
|
| Q |
197 |
ttagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17278933 |
ttagcaccaaagtcacttttcttgataattaatttttggatttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
17278840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 6794210 - 6794401
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |
|
|
| T |
6794210 |
accaacaacactcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggattt |
6794309 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6794310 |
agcaccaaaatcacttttcttaataattaatttttgggtttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
6794401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 23083170 - 23082979
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||| | || |||||| ||| |
|
|
| T |
23083170 |
accaacaacactcaatctacctcagaaaaaattggaaaatggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtcaaccaaattggattt |
23083071 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23083070 |
agcaccaaagtcaattttcttgataattaatttttggatttttattgctggaatttttcaactactagttgtagttgttgtggatgttttga |
23082979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 36142746 - 36142554
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaa-ttgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggctt |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36142746 |
accaacaacactcaatctacctcaaaaaaaaattgaaaatcggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatt |
36142647 |
T |
|
| Q |
198 |
tagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36142646 |
tagcaccaaagtcacttttcttgataattaatttctgggtttttattgctggattttctcaactgctagttgtagttgttgtggatgttttga |
36142554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 47112723 - 47112533
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
47112723 |
accaacaacactcaatctacctcag-aataattggaaattggtgtcgttcttcaatcttgaattcaattgggtgttgtgctagttatcccaattggattt |
47112625 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47112624 |
agcaccaaagtcactttttttgataattaatttttggatttttattgctggattttttcaactgttaattgtagttgttgtggatgttttga |
47112533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 49653297 - 49653166
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49653297 |
accaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggattt |
49653198 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaattt |
231 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
49653197 |
agcaccaaagtcac-tttcttgataattaattt |
49653166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 35122808 - 35122683
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| |||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
35122808 |
accaacaacactcaatctacctcagaaaaaattggaaatcggtgtcgttcatcaaccttggattcaattgggtgttgtgctagttatcccagttggattt |
35122709 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataa |
224 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
35122708 |
agcaccaaagccacttttcttgataa |
35122683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 49652877 - 49652820
Alignment:
| Q |
233 |
tgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
49652877 |
tgggtttttattgctggattttttcaactgctagttgtgattgttgtggatgttttga |
49652820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 32304698 - 32304888
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32304698 |
accaacaacattcaatctacctcag-aataattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggattt |
32304796 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32304797 |
agcaccaaagtcactttttttgataattaatttttggatttttattgctggatttttttaactgttagttgtagttgttgtggatgttttga |
32304888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 42540628 - 42540818
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42540628 |
accaacaacactcaatctacctcag-aaaaattagaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggattt |
42540726 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42540727 |
agcaccaaagtcacttttttttataattaatttttggatttttattgctggattttttcaactcttagttgtagttgttgtggatgttttga |
42540818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 17509900 - 17510031
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17509900 |
accaacaacactcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggattt |
17509999 |
T |
|
| Q |
199 |
agcaccaaagtcacttttcttgataattaattt |
231 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |
|
|
| T |
17510000 |
agcaccaaagtcgc-cttcttgataattaattt |
17510031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 34817897 - 34817830
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaat |
166 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
34817897 |
accaacaacactcaatctacctcagaaaaaattggaaatcggtgccgctcttcaaccttggattcaat |
34817830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 34817828 - 34817771
Alignment:
| Q |
233 |
tgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
34817828 |
tgggtttttattgctggactttttcaattgctagttgtagttgttgtggatgttttga |
34817771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 17514289 - 17514345
Alignment:
| Q |
233 |
tgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
17514289 |
tgggtttttattgctaaatttt-tcaactgttagttgtagttgttgttgatgttttga |
17514345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 9086760 - 9086953
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaa--ttgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggct |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
9086760 |
accaacaacattcaatctacctcaggaaaaaaattggaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggat |
9086859 |
T |
|
| Q |
197 |
ttagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9086860 |
ttagcaccaaagtcacttttcttgataattaatttttggatttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
9086953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 40681087 - 40680893
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaa--ttgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggct |
196 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
40681087 |
accaacaacacttaatctacctcagaaaaaaaattggaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggat |
40680988 |
T |
|
| Q |
197 |
ttagcaccaaagtcacttttcttgataattaat-ttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40680987 |
ttagcaccaaagtcacttttcttgataattaattttttggatttttattgctggattatttcaactgctagttgtagttgttgtggatgttttga |
40680893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 13462740 - 13462546
Alignment:
| Q |
99 |
accaacaacactcaatctacctcaggaaaaa---ttgaaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggc |
195 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
13462740 |
accaacaacactcaatctacctcagaaaaaaattttggaaattggtgatgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattgga |
13462641 |
T |
|
| Q |
196 |
tttagcaccaaagtcacttttcttgataattaatttttgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
13462640 |
tttagcaccaaagtcacttttcttgataattaatttttggatttttattgctggattttttcaactgctagttgtagtagttgtggatgttttga |
13462546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 21767 - 21824
Alignment:
| Q |
233 |
tgggtttttattgctggattttttcaactgttagttgtagttgttgtggatgttttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21767 |
tgggtttttattgctggattttttcaactgctagttgtagttgttgtggatgttttga |
21824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 21701 - 21765
Alignment:
| Q |
102 |
aacaacactcaatctacctcaggaaaaattgaaaattggtgccattcttcaaccttggattcaat |
166 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
21701 |
aacaacactcaatctacctcataaaaaattggaaatcggtgccgctcttcaaccttggattcaat |
21765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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