View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6077_high_1 (Length: 214)
Name: NF6077_high_1
Description: NF6077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6077_high_1 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 47267363 - 47267563
Alignment:
| Q |
14 |
aaaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267363 |
aaaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgt |
47267462 |
T |
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| Q |
114 |
caaatacaatcaaggaagaagataccaccaccctagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttca |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47267463 |
caaatacaatcaaggaagaagataccacaaccctagttcatcaatctttcttctttaggacttcagacattgttgtgcttcgtctcttggttccatttca |
47267562 |
T |
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| Q |
214 |
c |
214 |
Q |
| |
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| T |
47267563 |
c |
47267563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 47292883 - 47292685
Alignment:
| Q |
16 |
accttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
47292883 |
accttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccatcttgaatacaaacaaattttttcgcca |
47292784 |
T |
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| Q |
116 |
aatacaatcaaggaagaagataccaccaccctagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttcac |
214 |
Q |
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| T |
47292783 |
aataccattaaggaagaagatactgcttctctagttcatcgatctttcttctttagagcttctgacatagctgcgcttcgtctcttggttccatttcac |
47292685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 47299490 - 47299292
Alignment:
| Q |
16 |
accttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtca |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||| || |
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| T |
47299490 |
accttccattcaacctgtgtggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgcca |
47299391 |
T |
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| Q |
116 |
aatacaatcaaggaagaagataccaccaccctagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttcac |
214 |
Q |
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| T |
47299390 |
aatacaattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcac |
47299292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 47242453 - 47242609
Alignment:
| Q |
15 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||| | |
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| T |
47242453 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacatgcaaccatcgtgaatacgaacaaatactttcgcc |
47242552 |
T |
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| Q |
115 |
aaatac---aatcaaggaagaagataccaccaccctagttcatcaatctttcttctt |
168 |
Q |
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| T |
47242553 |
aaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttctt |
47242609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 47256581 - 47256737
Alignment:
| Q |
15 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||| |||||||| || || | |
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| T |
47256581 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccatcgtgaatatgaacaaatacttccgcc |
47256680 |
T |
|
| Q |
115 |
aaatac---aatcaaggaagaagataccaccaccctagttcatcaatctttcttctt |
168 |
Q |
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|||||| ||||||||||||||||| || | |||| ||||||||||||||||| |
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| T |
47256681 |
aaatacgtacatcaaggaagaagatactactattgtagtccatcaatctttcttctt |
47256737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 47278733 - 47278854
Alignment:
| Q |
15 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtc |
114 |
Q |
| |
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|||||||||||||||| |||||| || ||||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||| |
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| T |
47278733 |
aaccttccattcaaccggtatggcgcagagagatcctaatggcaagagaccctccacgtgttacttgcaaccatcatgaatacgaacaaatactttcgtc |
47278832 |
T |
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| Q |
115 |
aaatacaatcaaggaagaagat |
136 |
Q |
| |
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||||| | ||||||||||||| |
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| T |
47278833 |
aaatatcaacaaggaagaagat |
47278854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 47283326 - 47283484
Alignment:
| Q |
15 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtc |
114 |
Q |
| |
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|||||||||||||||| |||||| || ||||| |||||||| |||||||| |||| |||||| |||||||||| |||||| |||||||| || |||| |
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| T |
47283326 |
aaccttccattcaaccagtatggcgcagagagatcctaatggctagagaccctccacgcattacttgcaaccatcgtgaatatgaacaaatacttacgtc |
47283425 |
T |
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| Q |
115 |
aaatacaatcaaggaagaaga---taccaccaccctagttcatcaatctttcttcttta |
170 |
Q |
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||||| | |||||||||||| | | || ||| |||| ||||||||||||||||||| |
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| T |
47283426 |
aaatatcaacaaggaagaagatgctgctactaccatagtccatcaatctttcttcttta |
47283484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 32731124 - 32731280
Alignment:
| Q |
15 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||| | |
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| T |
32731124 |
aaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatgtattacatgcaaccatcgtgaatacgaacaaatactttcgcc |
32731223 |
T |
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| Q |
115 |
aaatac---aatcaaggaagaagataccaccaccctagttcatcaatctttcttctt |
168 |
Q |
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|||||| ||||| ||||||||||| || | | |||| ||||||||||||||||| |
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| T |
32731224 |
aaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttctt |
32731280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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