View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6078_high_1 (Length: 993)
Name: NF6078_high_1
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 182 - 697
Target Start/End: Complemental strand, 40791023 - 40790508
Alignment:
| Q |
182 |
taactctgagagaggaccaagaatgacaacaatatggaattttggttactctgcatattcatggaggtgaagaatattggtggggaacaaatcattnnnn |
281 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40791023 |
taactctgagataggatcaagaatgacaacaatatggaattttggttactctgcatattcatggaggtgaagaatattggtggggaacaaatcattaaaa |
40790924 |
T |
|
| Q |
282 |
nnnngtaagataattaaggatcttttacaatatgcctttgcatattatatggacccttctcccacgtatggccacatctacatatatatgaagnnnnnnn |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40790923 |
aaaagtaagataattaaggatcttttacaatatgcctttgcatattatatggacccttctcccacgtatggccacaactacatatatatgaagaaaaaaa |
40790824 |
T |
|
| Q |
382 |
ncatgaatggaatttttagcactgaagtgagaaagaatctttagtattttgatcgatgaccccatctatcgatcatgattggttgagatcattatatggt |
481 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
40790823 |
acatgaatggaatttttagcactgaagtaagaaagaatctttagtattttgattgatgaccccatctatctatcatgattgattgagatcattatatggt |
40790724 |
T |
|
| Q |
482 |
cttcacaaagttgtacacaatttcaagctttcaattcttgtattttatacggatataatttcttataagtcacagaaattggaattgatcttctttttca |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40790723 |
cttcacaaagttgtacacaatttcaagctttcaattcttgtattttatacggatataatttcttataagtcacagaaattggaattgatcttctttttca |
40790624 |
T |
|
| Q |
582 |
cttgctcatgaaatttattatctcttttttaaaatctagtatttttgtctcttgttgaaaactttgttatgaaagtgatatgtcaagttatttattgaca |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40790623 |
cttgctcatgaaatttattatctcttttttaaaatctagtatttttgtctcttgttgaaatctttgttatgaaagtgatatgtcaagttatttattgaca |
40790524 |
T |
|
| Q |
682 |
tgacataaaacctgtt |
697 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40790523 |
tgacataaaacctgtt |
40790508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 40792081 - 40791922
Alignment:
| Q |
18 |
aggatgatatgacattataacatttgaaagttgaagttttacttgtcacaaaagaaaatatacgactcgtcgatcaatgaaaaaattgtgttagaagaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40792081 |
aggatgatatgacattataacatttggaagttgaagttttacttgtcacacaagaaaatatacgactcgtcgatcaatgaaaaaattgtgttagaagaga |
40791982 |
T |
|
| Q |
118 |
aatttgagaagtgaaaagagtaattttctcacttaatttcactttcactgttaaatagtt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40791981 |
aatttgagaagtgaaaagagtaattttctcacttaatttcactttcactgttaaatagtt |
40791922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 791 - 978
Target Start/End: Complemental strand, 40787412 - 40787232
Alignment:
| Q |
791 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaacttcacatgatttgaattatgaggcataactaaaagacaattatagaaa |
890 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
40787412 |
gaagtaatgagaatcaatattacctcaagatcatgcgaaaatttatttaaacttcacatgatttgaattatgaggcataactaaatga----------aa |
40787323 |
T |
|
| Q |
891 |
attgtatgatgagagccataagtattatatgatataggttggattcaattttatataata---tctgttataataccagctgctatatatt |
978 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40787322 |
attgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttctgttataataccagctgctatatatt |
40787232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 791 - 978
Target Start/End: Complemental strand, 15007803 - 15007608
Alignment:
| Q |
791 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaact---tcacatgatttgaattatgaggcataactaaaagacaattatag |
887 |
Q |
| |
|
||||||| | ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15007803 |
gaagtaatgtgaatcaatattaccttaagttcatgcgaaaatttatttgaactaattcacatgatttgaattatgaggcctaactaaaagacaattatag |
15007704 |
T |
|
| Q |
888 |
aaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatc-----tgttataataccagctgctatatatt |
978 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15007703 |
aaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttcaatgttataataccagctgctatatatt |
15007608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 820
Target Start/End: Original strand, 52311122 - 52311151
Alignment:
| Q |
791 |
gaagtaacgagaatcaatattacctcaagt |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52311122 |
gaagtaacgagaatcaatattacctcaagt |
52311151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University