View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6078_high_13 (Length: 251)

Name: NF6078_high_13
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6078_high_13
NF6078_high_13
[»] chr6 (2 HSPs)
chr6 (88-251)||(9884486-9884649)
chr6 (205-251)||(14247685-14247731)
[»] chr5 (1 HSPs)
chr5 (89-251)||(135099-135263)
[»] chr2 (1 HSPs)
chr2 (88-251)||(20421267-20421429)
[»] chr1 (1 HSPs)
chr1 (88-251)||(15607059-15607219)
[»] scaffold0003 (2 HSPs)
scaffold0003 (144-233)||(111987-112076)
scaffold0003 (100-143)||(111919-111962)
[»] scaffold1801 (1 HSPs)
scaffold1801 (197-251)||(748-802)
[»] scaffold0902 (1 HSPs)
scaffold0902 (88-145)||(2089-2146)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 9884649 - 9884486
Alignment:
Q  88 cttactgtataggtccggggaaattgatgaagtcttctaatattggcctagtactagagtgaacatgtgctgtgaaaaagctttcataatatgtgtgttc 187  Q
    |||| ||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9884649 cttagtgtttaggtccaggggaattgatgaagtcttctaacattggcctagtactagagtgaacatgtgctgtgataaagctttcataatatgtgtgttc 9884550  T
Q  188 ttatactgattctttggtttctctgtgatgaaattctgtatttttgcattttgggtttctctaa 251  Q
     |||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9884549 gtatgttgattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaa 9884486  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 14247731 - 14247685
Alignment:
Q  205 tttctctgtgatgaaattctgtatttttgcattttgggtttctctaa 251  Q
    ||||| ||||||||||||  |||||||||||||| ||||||||||||    
T  14247731 tttctttgtgatgaaatttagtatttttgcatttagggtttctctaa 14247685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 135099 - 135263
Alignment:
Q  89 ttactgtataggtccggggaaattgatgaagtcttctaatattggcctagtactagagtgaacatgtgctgtgaaaaagctttcataatatgtgtgttct 188  Q
    ||||||| || |||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  135099 ttactgtttatgtccaggggaattgatgacgtcttctaacattggcctagtactagagtgaacatgtgctgtgaaaaagctttcataatacgtgtgttct 135198  T
Q  189 tatactgattctttggtttctctgtgatgaaattctgtattttt-gca-ttttgggtttctctaa 251  Q
    ||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  135199 tatgctgattctttggtttctttgtgatgaaattctgtatttttcgcatttttgggtttctctaa 135263  T

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Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 20421267 - 20421429
Alignment:
Q  88 cttactgtataggtccggggaaattgatgaagtcttctaatattggcctagtactagagtgaacatgtgctgtgaaaaagctttcataatatgtgtgttc 187  Q
    |||| ||| ||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||| ||| | |||||||||||||    
T  20421267 cttagtgtttaggtccaggggaattgatgaagtcttctaacattggcatagtactagagtgaacatgtgttgtgataaag-tttgaaaatatgtgtgttc 20421365  T
Q  188 ttatactgattctttggtttctctgtgatgaaattctgtatttttgcattttgggtttctctaa 251  Q
    ||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  20421366 ttatgttgattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaa 20421429  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 15607059 - 15607219
Alignment:
Q  88 cttactgtataggtccggggaaattgatgaagtcttctaatattggcctagtactagagtgaacatgtgctgtgaaaaagctttcataatatgtgtgttc 187  Q
    |||||||| ||||||| ||| ||||||||||||||||| | |||| ||| |||||||| ||||||| |||| |||||||   |||||||||||||||||     
T  15607059 cttactgtttaggtccaggggaattgatgaagtcttctgacattgtccttgtactagattgaacatatgctttgaaaaa---ttcataatatgtgtgttg 15607155  T
Q  188 ttatactgattctttggtttctctgtgatgaaattctgtatttttgcattttgggtttctctaa 251  Q
     ||| ||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||    
T  15607156 atatgctgattctttggtttctttgtgatgaaattctgtattttcgtattttggttttctctaa 15607219  T

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Target: scaffold0003 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 111987 - 112076
Alignment:
Q  144 gagtgaacatgtgctgtgaaaaagctttcataatatgtgtgttcttatactgattctttggtttctctgtgatgaaattctgtatttttg 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  111987 gagtgaacatgtgctgtgaaaaagctttcataatacgtgtgttcttatgctgattctttggtttctttgtgatgaaattctgtatttttg 112076  T

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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 111919 - 111962
Alignment:
Q  100 gtccggggaaattgatgaagtcttctaatattggcctagtacta 143  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||    
T  111919 gtccaggggaattgatgaagtcttctaacattggcctagtacta 111962  T

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Target: scaffold1801 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 748 - 802
Alignment:
Q  197 ttctttggtttctctgtgatgaaattctgtatttttgcattttgggtttctctaa 251  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  748 ttctttggtttctctgtgataaaatttagtatttttgcattttgggtttttctaa 802  T

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Target: scaffold0902 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 2146 - 2089
Alignment:
Q  88 cttactgtataggtccggggaaattgatgaagtcttctaatattggcctagtactaga 145  Q
    |||||||| ||||||  ||| ||||||||||| ||||| | |||||||||||||||||    
T  2146 cttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtactaga 2089  T

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