View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_high_17 (Length: 235)
Name: NF6078_high_17
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 46791522 - 46791626
Alignment:
| Q |
115 |
tacaacttaa-ccttgtttgaaaatttctgttttatttgattaaaacagcatatttaggtaatacataagtaggtgtagccctggaatcctcagagagtt |
213 |
Q |
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| T |
46791522 |
tacaacttaaaccatgtttgaaaatttctgttttatttgattaaaacagcatatttaggtaatacataggtaggtgtagccctggaatcctcagagagtt |
46791621 |
T |
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| Q |
214 |
gttag |
218 |
Q |
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||||| |
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| T |
46791622 |
gttag |
46791626 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 46791440 - 46791531
Alignment:
| Q |
1 |
aagaaaaaacagctaccaaaaaccttggcaatgtttcacagnnnnnnnccctatttaagagaaatcaagcataacataacaatacaacttaa |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46791440 |
aagaaaaaacagctaccaaaaaccttggcaatgtttcacagaaagataccctatttaagagaaatcaagcataacataacaatacaacttaa |
46791531 |
T |
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