View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_high_7 (Length: 350)
Name: NF6078_high_7
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_high_7 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 44112193 - 44112523
Alignment:
| Q |
1 |
ttggtggatccaaagaacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctaca |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44112193 |
ttggtggatccaaagaacaatcaatttgagatattagtagagaggaacaaccagggaatttatctgactatgggatgacatgctttccgtgatttctaca |
44112292 |
T |
|
| Q |
101 |
agttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112293 |
agttagcgcttggtgcttggattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaac |
44112392 |
T |
|
| Q |
201 |
ttttactccacctatggactagggttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttttacatgatgagtttaactttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44112393 |
ttttactccacctatggactagggttcaacacaacgttgctcctgctgttgttgactgggttgttccctgaccatttttacatgatgagtttaactttca |
44112492 |
T |
|
| Q |
301 |
acttacctatgagaagaagcttggttatgag |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
44112493 |
acttacctatgagaagaagcttggttatgag |
44112523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 331
Target Start/End: Complemental strand, 7531 - 7200
Alignment:
| Q |
2 |
tggtggatccaaagaacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaa |
101 |
Q |
| |
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||||||||||||| |||||||||| || | | || ||||| ||||| ||||| ||||||||||||| | | ||||| | | | |||||||| ||||| |
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| T |
7531 |
tggtggatccaaacaacaatcaattcgaagtcctggtggagagaaacaatcaggggatttatctgactaggggctgacacgttatgcgtgatttttacaa |
7432 |
T |
|
| Q |
102 |
gttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaact |
201 |
Q |
| |
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|||| ||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| |
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| T |
7431 |
gttacatcttggtgcttggattaaaattgtctggatgggagatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaaca |
7332 |
T |
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| Q |
202 |
tttactccacctatggact--agggttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttttacatgatgagtttaactttc |
299 |
Q |
| |
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||||| ||||| ||||| | | |||| | | |||||||| ||| | ||||||||||||| ||||||| ||| ||| | |||||||||| |||||||| |
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| T |
7331 |
tttacgccaccaatggaattcaaggttgagcccaatgttgttccggttgttgttgactggtttgttccccaaccttttatgcatgatgagtataactttc |
7232 |
T |
|
| Q |
300 |
aacttacctatgagaagaagcttggttatgag |
331 |
Q |
| |
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| |||||||||||||||||||||||||||||| |
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| T |
7231 |
agcttacctatgagaagaagcttggttatgag |
7200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 326
Target Start/End: Complemental strand, 38896704 - 38896377
Alignment:
| Q |
2 |
tggtggatccaaagaacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaa |
101 |
Q |
| |
|
||||||||||||| |||||||||| || | || || ||||| ||||| ||||| |||||||||||| | | || || ||| | |||||||| ||||| |
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| T |
38896704 |
tggtggatccaaacaacaatcaattcgaagtcttggtggagagaaacaatcaggggatttatctgacttggggctggcacgctatgcgtgatttttacaa |
38896605 |
T |
|
| Q |
102 |
gttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaact |
201 |
Q |
| |
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|||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| |
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| T |
38896604 |
gttacatcttggtgcttggattacaattgtctggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaaca |
38896505 |
T |
|
| Q |
202 |
tttactccacctatggact--agggttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttt-tacatgatgagtttaacttt |
298 |
Q |
| |
|
||||| ||||| ||||| | | |||| | | ||||| || ||| | ||||||||||||| ||||||| ||| |||| | |||||||||| ||||||| |
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|
| T |
38896504 |
tttacgccaccaatggaattcaaggttgagcccaatgctgttccggttgttgttgactggtttgttccccaacctttttatgcatgatgagtataacttt |
38896405 |
T |
|
| Q |
299 |
caacttacctatgagaagaagcttggtt |
326 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
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| T |
38896404 |
cagcttacctatgagaagaagcttggtt |
38896377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 331
Target Start/End: Original strand, 24324551 - 24324882
Alignment:
| Q |
2 |
tggtggatccaaagaacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaa |
101 |
Q |
| |
|
||||||||||||| |||||||||| || | | || ||||||||||| ||||| |||||||| |||| | | || || ||| | |||||||| ||||| |
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| T |
24324551 |
tggtggatccaaacaacaatcaattcgaagtcctggtggagaggaacaatcaggggatttatctaactaggggttggcacgctatgcgtgatttttacaa |
24324650 |
T |
|
| Q |
102 |
gttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaact |
201 |
Q |
| |
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|||| ||||||||||| || || ||||| ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| |
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| T |
24324651 |
gttacatcttggtgcttggataacaattgtctggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaaca |
24324750 |
T |
|
| Q |
202 |
tttactccacctatggact--agggttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttttacatgatgagtttaactttc |
299 |
Q |
| |
|
||||| ||||| ||||| | | |||| | | |||||||| ||| | ||||||||||||| ||||||| || ||| | |||||||||| |||||||| |
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|
| T |
24324751 |
tttacgccaccaatggaattcaaggttgagcccaatgttgttccggttgttgttgactggtttgttccccagccttttatgcatgatgagtataactttc |
24324850 |
T |
|
| Q |
300 |
aacttacctatgagaagaagcttggttatgag |
331 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||| |
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|
| T |
24324851 |
aacttacatatgagaagaaacttggttgtgag |
24324882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 13102775 - 13102706
Alignment:
| Q |
136 |
atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta |
205 |
Q |
| |
|
||||| |||||||||||| |||||||| |||| || |||||||| ||||| ||||| |||||||| |||| |
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| T |
13102775 |
atgggaaatggaaggtttaatattagaatcaagaacaggtttggtaagagaattcgttacccaaccttta |
13102706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 2269524 - 2269460
Alignment:
| Q |
136 |
atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaac |
200 |
Q |
| |
|
||||| ||||||||||||||||||| | |||| || |||||||| ||||| ||||| |||||||| |
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|
| T |
2269524 |
atgggaaatggaaggtttgatattataatcaagaacaggtttggtaagagaattcgttacccaac |
2269460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 19256571 - 19256485
Alignment:
| Q |
16 |
aacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaag |
102 |
Q |
| |
|
||||||| || |||| |||| || || ||||| ||| |||||||||||||||||| | | || |||||| | ||||||||||||||| |
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| T |
19256571 |
aacaatcgatttgaggtattggtggaaaggaataactagggaatttatctgactaagggttggcatgctattcgtgatttctacaag |
19256485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 16797450 - 16797519
Alignment:
| Q |
136 |
atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta |
205 |
Q |
| |
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||||| ||||||||||||||||||||| |||| || | |||||| || || ||||| |||||||| |||| |
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| T |
16797450 |
atgggaaatggaaggtttgatattagaatcaagaacatgtttggtaatagaattcgttacccaaccttta |
16797519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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