View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_low_12 (Length: 254)
Name: NF6078_low_12
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 35906953 - 35906741
Alignment:
| Q |
25 |
acaatcagttcaaattagtaaactacttgttaatttttgtatttgtaaacttactactagcttgcatatataaacaaggaacaagaaatttgtaaataag |
124 |
Q |
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| T |
35906953 |
acaatcagttcaaattagtaaactacttgttaatttttgtatttgtaaacttactactagcttgcatatataaacaaggaacaagaaatttgtaaataag |
35906854 |
T |
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| Q |
125 |
aaccaaacagattcattcattagtcattccaaacaaaacaagagatttgtacataacagaacataacaaagcaagggaattataaaaattaaacgcccca |
224 |
Q |
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| T |
35906853 |
aaccaaacagattcattcattagtcattccaaacaaaacaagagatttgtacataacagaacataacaaagcaagggaattataaaaattaaacgcccca |
35906754 |
T |
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| Q |
225 |
atttgtacaaaat |
237 |
Q |
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||||||||||||| |
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| T |
35906753 |
atttgtacaaaat |
35906741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 35913141 - 35913087
Alignment:
| Q |
112 |
atttgtaaataagaaccaaacagattcattcattagtcattccaaacaaaacaagagat |
170 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35913141 |
atttgtaaataagaaccaaaca----aattcattagtcattccaaactaaacaagagat |
35913087 |
T |
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