View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6078_low_14 (Length: 248)
Name: NF6078_low_14
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27321288 - 27321054
Alignment:
| Q |
1 |
tagtgctcgcttgaactataaataaaatcaaaatgttaattctatgaaaacaaagattagctccatcattatacataaaataaacaattcaatagtaaac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27321288 |
tagtgctctcttgaactataaataaaatcaaaattttaattctatgaacacgaagattagctccatcattatacataaaataaacaattcaatagtaaac |
27321189 |
T |
|
| Q |
101 |
ttattttcatcctcacccaaactcaatcatataattttaatactcaatcaatttaaactaaacgatccgaagaacgttctccagcatcaactttgtccat |
200 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27321188 |
ttattttcacccacacccaatctcaatcat---aatttaatactcaatcaatttaaactaaacgatccgaagaacgttctccagcatcaactttgctcat |
27321092 |
T |
|
| Q |
201 |
aacattcattgttgcacttgcattgttcccatcctttg |
238 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27321091 |
aacacccattgttgcacttgcattgttcccatcctttg |
27321054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University