View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_low_18 (Length: 231)
Name: NF6078_low_18
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_18 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15607319 - 15607539
Alignment:
| Q |
1 |
tgtatttttcattgctatatgtatttgtaattttagtgtgtgaaaaaagagataatttgatcctttaattggttgttcagaatttcatcagttgtaggat |
100 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
15607319 |
tgtatttttcactgctatatgtacttgtaattttagtgtgtgaaaatggagataacttgatcctttaatttgttgttcagaattttatcagttgtaggat |
15607418 |
T |
|
| Q |
101 |
ccaatcacaatgattgtggctgttgtttctgattgttgacaactgatttcttttttctgaatggtgtttagctctttaaatgtacatttgaaagccttag |
200 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
15607419 |
gcaagtacaatgattgtggctgttgtttctgatttttgacaactgaattc-ttcttctgaatggtttttagctctttaaatgtatatttgaaagccttag |
15607517 |
T |
|
| Q |
201 |
catctgtaacaatatcttgaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
15607518 |
catctgtaacaatatcttgaac |
15607539 |
T |
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Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 20421529 - 20421698
Alignment:
| Q |
1 |
tgtatttttcattgctatatgtatttgtaattttagtgtgtgaaaaaagagataatttgatcctttaattggttgttcagaatttcatcagttgtaggat |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
20421529 |
tgtatttttcattgctgtatgtatttgtaattttagtgtgtaaaaaaagagataatttgatcctttaatttgttgtttagaatttcatcagttgtaggat |
20421628 |
T |
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| Q |
101 |
ccaatcacaatgattgtggctgttgtttctgattgttgacaactgatttcttttttctgaatggtgtttagct |
173 |
Q |
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| T |
20421629 |
gcaattacaatgattgtg---gttgtttctgatttttgacaactgatttcttttttctgaatggtgtttagct |
20421698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 112187 - 112349
Alignment:
| Q |
1 |
tgtatttttcattgctatatgtatttgtaattttagtgt--gtgaaaaaagagataatttgatcctttaattggttgttcagaatttcatcagttgtagg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
112187 |
tgtatttttcattgctatatgtatttgtaattttagtgtgtgtgaaaaaagagataatttgatcctttaattggttgttcaaaatttcatcagttgtagg |
112286 |
T |
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| Q |
99 |
atccaatcacaatgattgtggctgttgtttctgattgttgacaactgatttcttttttctgaa |
161 |
Q |
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|| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
112287 |
atgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttcttttttctgaa |
112349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 135362 - 135525
Alignment:
| Q |
1 |
tgtatttttcattgctatatgtatttgtaattttagtgtgtgaaaaaaga-gataatttgatcctttaattggttgttcagaatttcatcagttgtagga |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
135362 |
tgtatttttcattgctatatgtatttataattttagtgtgtgaaaaaaaaagatactttaatcctttaattggttgttcaaaatttcatcagttgtagga |
135461 |
T |
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| Q |
100 |
tccaatcacaatgattgtggctgttgtttctgattgttgacaactgatttcttttttctgaatg |
163 |
Q |
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| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
135462 |
tgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttcttttttctgaatg |
135525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 9884308 - 9884212
Alignment:
| Q |
122 |
gttgtttctgattgttgacaactgatttcttttttctgaatggtgtttagctctttaaatgtacatttgaaagccttagcatctgtaacaatatctt |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9884308 |
gttgtttctgatttttgacaactgatttcttttttctgaatggtgtttagcttcttaaatgtacatttgaaagccttagcatctataacaatatctt |
9884212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9884386 - 9884317
Alignment:
| Q |
1 |
tgtatttttcattgctatatgtatttgtaattttagtgtgtgaaaaaagagataatttgatcctttaatt |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9884386 |
tgtatttttcattgctatatgtatttgtaattttagtgtgtgaaaaaagagataatttgatcctttaatt |
9884317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 36909858 - 36909776
Alignment:
| Q |
6 |
ttttcattgctatatgtatttgtaattttag-tgtgtgaaaaaa--gagataatttgatcctttaattggttgttcagaattt |
85 |
Q |
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|||||| || ||||||| ||||| ||||| | |||||||||||| || |||| |||||||||| |||||||||||||||||| |
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| T |
36909858 |
ttttcactgttatatgtgtttgtgatttttgctgtgtgaaaaaatggacataacttgatcctttgattggttgttcagaattt |
36909776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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