View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_low_2 (Length: 532)
Name: NF6078_low_2
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 28862414 - 28862029
Alignment:
| Q |
11 |
cagagattcccaagcttcagtaatcattggaactgagttttgcagaagaggatctgacttatcattgggattgtccacctggttagaagaagagttctcc |
110 |
Q |
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| T |
28862414 |
cagagattcccaagcttcattaatcattggaactgagttttgcagaagagaatctgccttatcattgggattgtccacctggttagaagaagagttctcc |
28862315 |
T |
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| Q |
111 |
tcagttttattcaatgcggaaaagaatgctgcagacagtgttgcacatcgacccaatggtcgatccatatttgcaatttcactagtattgtattgatcaa |
210 |
Q |
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| T |
28862314 |
tcagttttattcaatgcggaaaagaatgctgcagacagtgttgcacatcgacccaatggtcgatccatatttgcaatttcactagtattgtattgatcaa |
28862215 |
T |
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| Q |
211 |
attctgcaattaagtcagaataatatcaatgagattaaataatcaccatgaatcttaaacctgttcttgtgaaatgctaaattctatatttggtaacagt |
310 |
Q |
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| T |
28862214 |
attctgcaattaagtcagaataatatcaatgagattaaataatcaacatgaatcttaaacctgttcttgtgaaattctaaattctatatttggtaacagt |
28862115 |
T |
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| Q |
311 |
taaaagaccatgaaatttttgcatgtgatttcaaacatacatcatttcatggattccttaaagcagatatacatttagaaactctt |
396 |
Q |
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| T |
28862114 |
taaaagaccatgaaatttttgcatgtgatttcaaacatacatcatttcatggattccttaaagcagatatacatttagaaactctt |
28862029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 28862006 - 28861954
Alignment:
| Q |
465 |
acgatcaaaattcaagaattcattcaagaacgtacactcacatgcatgctttc |
517 |
Q |
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| T |
28862006 |
acgatcaaaattcaagaattcattcaagaacgtacactcacatgcatgctttc |
28861954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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