View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_low_3 (Length: 531)
Name: NF6078_low_3
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 4 - 517
Target Start/End: Complemental strand, 11524 - 11010
Alignment:
| Q |
4 |
ggagtagca-aagggccccatatatcagcatgtaacaaatcaaaaatgttattagaatgagtaacactattaggataaggaagaactctttgtttggaaa |
102 |
Q |
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| T |
11524 |
ggagtagcataagggccccatatatcagcatgtaacaaatcaaaaatgttattagaatgagtaacactattaggataaggaagaactctttgtttggaaa |
11425 |
T |
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| Q |
103 |
aatgacaaacatcacaaggagtatttttattatgattcttgtaagaaataaaaggataagttgaagcaatacatttgtgaatagcgtcagagatatgacc |
202 |
Q |
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| T |
11424 |
aatgacaaacatcacaaggagtatttttattatgattcttgtaagaaataaaaggataagttgaagcaatacatttgtgaatagcgtcagagatatgacc |
11325 |
T |
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| Q |
203 |
taatctacaatgccataatgaggcagaatccatgttattagaaacagaattacaagaaagcatgggagaaagcaaagaaactgaggcatgggcttgtata |
302 |
Q |
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| T |
11324 |
taatctacaatgccataaagaggcagaatccatgttattagaaacagaattacaagaaagcatgggagaaagtaaagaaactgaggcatgggcttgtata |
11225 |
T |
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| Q |
303 |
gcatacaaatctccatgtctctcagctgtaccaatcattttcttggtggaattctgcaaaatcaaacacttattaagttgaaaggtaacatgacaatcca |
402 |
Q |
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| T |
11224 |
gcatacaaatctccatgtctctcagctgtaccaatcattttcttggtggaattctgcaaaatcaaacacttattaagttgaaaggtaacatgacaatcca |
11125 |
T |
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| Q |
403 |
aagaagtaagtaacttagttacagaaattaaattaacattaaaagatggtatgtaatacacatttgttaaagtaatatcagatgaaagttttactattcc |
502 |
Q |
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| T |
11124 |
aagaagtaagtaacttagttacagaaattaaattaacattaaaagatggtatggaatacacatttgttaaagtaatatcagatgaaagttttactgttcc |
11025 |
T |
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| Q |
503 |
taagatagtagcatt |
517 |
Q |
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| T |
11024 |
taagatagtagcatt |
11010 |
T |
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Back To:
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 22454726 - 22454768
Alignment:
| Q |
166 |
aagcaatacatttgtgaatagcgtcagagatatgacctaatct |
208 |
Q |
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| T |
22454726 |
aagcaatacatttgtgaatagcgtcagagatatgacctaatct |
22454768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 41059929 - 41059995
Alignment:
| Q |
302 |
agcatacaaatctccatgtctctcagctgtaccaatcattttcttggtggaattctgcaaaatcaaa |
368 |
Q |
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| T |
41059929 |
agcatacaaacatccatgtctctcctccgtaccaatcagtttcttggttgaattatgtaaaatcaaa |
41059995 |
T |
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