View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6078_low_4 (Length: 484)

Name: NF6078_low_4
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6078_low_4
NF6078_low_4
[»] chr5 (5 HSPs)
chr5 (181-474)||(39099477-39099766)
chr5 (47-192)||(39099869-39100015)
chr5 (91-200)||(3758192-3758301)
chr5 (234-309)||(39194713-39194791)
chr5 (155-217)||(141847-141909)
[»] chr1 (10 HSPs)
chr1 (91-200)||(9221230-9221337)
chr1 (107-163)||(44442278-44442333)
chr1 (99-219)||(46370805-46370925)
chr1 (136-200)||(8836543-8836605)
chr1 (133-196)||(64875-64936)
chr1 (111-200)||(12590656-12590744)
chr1 (98-198)||(47031478-47031576)
chr1 (131-186)||(14774108-14774161)
chr1 (131-199)||(26687531-26687598)
chr1 (110-186)||(28672314-28672388)
[»] chr4 (3 HSPs)
chr4 (91-219)||(50086415-50086542)
chr4 (98-198)||(42956985-42957084)
chr4 (91-196)||(51105918-51106021)
[»] chr7 (6 HSPs)
chr7 (91-199)||(40065790-40065899)
chr7 (142-216)||(28733815-28733889)
chr7 (99-186)||(3256642-3256728)
chr7 (165-219)||(44452121-44452175)
chr7 (174-219)||(46684625-46684670)
chr7 (107-198)||(676396-676484)
[»] scaffold0009 (1 HSPs)
scaffold0009 (99-199)||(189062-189160)
[»] chr2 (5 HSPs)
chr2 (130-219)||(11001490-11001578)
chr2 (88-148)||(28931136-28931196)
chr2 (136-219)||(16717582-16717663)
chr2 (127-215)||(33275936-33276023)
chr2 (131-199)||(18227115-18227181)
[»] chr8 (9 HSPs)
chr8 (107-163)||(29487082-29487138)
chr8 (91-198)||(22209400-22209505)
chr8 (91-197)||(20279562-20279666)
chr8 (91-197)||(21066189-21066293)
chr8 (91-222)||(37166990-37167119)
chr8 (155-219)||(32646792-32646856)
chr8 (127-222)||(7528270-7528363)
chr8 (97-186)||(1576375-1576462)
chr8 (127-188)||(13328360-13328418)
[»] scaffold0192 (1 HSPs)
scaffold0192 (127-198)||(15938-16007)
[»] scaffold0178 (1 HSPs)
scaffold0178 (107-149)||(15910-15952)
[»] chr3 (1 HSPs)
chr3 (110-197)||(39976721-39976805)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 181 - 474
Target Start/End: Complemental strand, 39099766 - 39099477
Alignment:
Q  181 aaaatgtttgaagagtgtttggggcactcgttaacaagatctcttatagtttaggttgttttcgcccttgtttgatgaggttgatatctcttcaagatat 280  Q
    |||| |||||||||||||||||| ||||||||||||||| |||         |||||| |||  || ||||||||||||||||||||||||||||| |||    
T  39099766 aaaaagtttgaagagtgtttgggacactcgttaacaagacctc---------aggttgcttttacc-ttgtttgatgaggttgatatctcttcaagttat 39099677  T
Q  281 aaaactccatacaaaataaactatataaata------actaacaagattaaaatgatctatctaattatggggacatacaaaaccaactattggctaagt 374  Q
    |||||||||||||| ||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099676 aaaactccatacaacataaactatataaatagatgtaagtaacaagattaaaatgatctatctaattatggggacatacaaaaccaactattggctaagt 39099577  T
Q  375 aaccgatcaaaatccatgaatatggcatgtgcaaaattgttggagttcacaaacaaccatgatgcccttaccaattatactttgtctttccaaccctttg 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099576 aaccgatcaaaatccatgaatatggcatgtgcaaaattgttggagttcacaaacaaccatgatgcccttaccaattatactttgtctttccaaccctttg 39099477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 39100015 - 39099869
Alignment:
Q  47 gggaaatgttatcatgtgtttttgg-atactctttaaggactataataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaat 145  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  39100015 gggaaatgtcaacatgtgtttttgggatactctttaaggactataataagtggtaagtatttataaaaatatgtgtattcgatgcattgaaaatcgaaat 39099916  T
Q  146 atttgaacttttttaaaggaataattgtttattttaaaatgtttgaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39099915 atttgaacttttttaaaggaataattgtttattttaaaatgtttgaa 39099869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 3758301 - 3758192
Alignment:
Q  91 ataaatggtaagtatatat--aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtt 188  Q
    |||||| |||||||| |||  ||||| |||| ||||  ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  3758301 ataaattgtaagtatttatgaaaaaaaatgtatattcaatgcattgaaaatcgaaatatttga-cttttttaaag-aataattgattattttaaaatgtt 3758204  T
Q  189 tgaagagtgttt 200  Q
    | ||||||||||    
T  3758203 taaagagtgttt 3758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 39194791 - 39194713
Alignment:
Q  234 ggttgttttcgcccttgtttgatgaggttgatatctcttcaagatataaaactccat---acaaaataaactatataaa 309  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||||||| | |||   | |||||||||||||||||    
T  39194791 ggttgctttcgcccttgtttgatgaggttgatatcttttcaagttataaaatttcataaaaaaaaataaactatataaa 39194713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 141909 - 141847
Alignment:
Q  155 tttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaa 217  Q
    |||||||| |||||||||||||||||   ||| || |||||||| ||||||||||||||||||    
T  141909 tttttaaaagaataattgtttattttggtatgcttaaagagtgtctggggcactcgttaacaa 141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 9221230 - 9221337
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    ||||| ||||||||| ||| |||||||||||||||  || |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||  ||     
T  9221230 ataaaaggtaagtatttatgaaaatatgtgtattaattgcattggaaatcgaaatattt-aacttttctaaa-gaataattgtttattttaaaatagtta 9221327  T
Q  191 aagagtgttt 200  Q
    ||||||||||    
T  9221328 aagagtgttt 9221337  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 44442333 - 44442278
Alignment:
Q  107 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag 163  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||    
T  44442333 tataaaaatatgtgtatttaatgtattgaaaattgaaatatttg-acttttttaaag 44442278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 46370925 - 46370805
Alignment:
Q  99 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 198  Q
    ||||||| || ||||||||||||| |  | | ||||||||||||||| ||| || ||||||||| ||||||||| || |||| | ||| || ||||||||    
T  46370925 taagtatttaaaaaaatatgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaa-gaataattgcttgttttgatatgcttaaagagtgt 46370827  T
Q  199 t-tggggcactcgttaacaaga 219  Q
    | |||| |||||||||| ||||    
T  46370826 tctgggacactcgttaaaaaga 46370805  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 8836543 - 8836605
Alignment:
Q  136 aaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgttt 200  Q
    |||||||||||||||| ||||||||||| |||||||||||||||  ||||| || ||||||||||    
T  8836543 aaatcgaaatatttga-cttttttaaag-aataattgtttatttcgaaatgcttaaagagtgttt 8836605  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 64875 - 64936
Alignment:
Q  133 tgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagt 196  Q
    ||||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||| ||||||    
T  64875 tgaaattcgaaatattt-aacgtttttaaag-aataattgtttattttagaatgtttaaagagt 64936  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 12590656 - 12590744
Alignment:
Q  111 aaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgttt 200  Q
    |||||| |||||||  ||| |||||||||| |||||||| ||||||||| ||   ||||||||||| ||||||||| || |||| |||||    
T  12590656 aaaatacgtgtattcaatgcattgaaaatcaaaatattt-aactttttttaatagataattgtttaatttaaaatgcttaaagaatgttt 12590744  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 47031576 - 47031478
Alignment:
Q  98 gtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 197  Q
    |||||||| | ||||||  |||||| |  |||||||| |||||||||||||| |  |||||||||  |||||||  |||||||| ||||||| |||||||    
T  47031576 gtaagtatttgtaaaaacgtgtgtaatgaatgtattggaaatcgaaatatttta--ttttttaaaaaaataattacttattttagaatgtttaaagagtg 47031479  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 14774161 - 14774108
Alignment:
Q  131 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 186  Q
    |||||||||||||||||||||  |||||||||  |||||||| |||||||| ||||    
T  14774161 attgaaaatcgaaatatttga--ttttttaaacaaataattgattattttagaatg 14774108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 26687598 - 26687531
Alignment:
Q  131 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtt 199  Q
    |||||||||||||||||||||  ||||||||| | || |||| |||||||| |||| || |||||||||    
T  26687598 attgaaaatcgaaatatttgactttttttaaaag-attattgcttattttagaatgcttaaagagtgtt 26687531  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 28672314 - 28672388
Alignment:
Q  110 aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 186  Q
    ||||||||||||| |  ||| ||| |||||| ||||||||| |||||||||||  ||||||||||||||||| ||||    
T  28672314 aaaaatatgtgtaatcaatgcatttaaaatcaaaatatttg-acttttttaaa-aaataattgtttattttagaatg 28672388  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 50086415 - 50086542
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    |||| ||||||| || ||| ||||||||||||||  ||| |||||||||| ||||||||||  |||||| || |||||||||||||||||  |||||||     
T  50086415 ataagtggtaagcatttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttga--tttttttaaagaataattgtttattttggaatgttta 50086512  T
Q  191 aagagtgt-ttggggcactcgttaacaaga 219  Q
    |||||| |   |||||||||||||||||||    
T  50086513 aagagtttcccggggcactcgttaacaaga 50086542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 42956985 - 42957084
Alignment:
Q  98 gtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 197  Q
    |||||||| ||||||||| |||||| |  ||| |||| |||| |||||||||| | |||||||||  ||||| || |||||||| ||||||| |||||||    
T  42956985 gtaagtatttataaaaatgtgtgtaattaatgcattggaaattgaaatatttg-atttttttaaaataataactgcttattttagaatgtttaaagagtg 42957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 51106021 - 51105918
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    |||||| |||| ||| ||| |||||||| ||| |   ||||||||||||  |||||||||| ||||||||||  ||||||||||||||||| ||| |||     
T  51106021 ataaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttga-cttttttaaat-aataattgtttattttagaatattta 51105924  T
Q  191 aagagt 196  Q
    ||||||    
T  51105923 aagagt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 40065790 - 40065899
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag--gaataattgtttattttaaaatgtt 188  Q
    |||| |||||||||| ||||||||||  |||||| ||||||||||||||| |||||||| |||||||||||||   | || ||| ||||||||||||| |    
T  40065790 ataagtggtaagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatattt-aacttttttaaagaatactacttgcttattttaaaatgat 40065888  T
Q  189 tgaagagtgtt 199  Q
    |||| ||||||    
T  40065889 tgaaaagtgtt 40065899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 28733815 - 28733889
Alignment:
Q  142 aaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttg-gggcactcgttaaca 216  Q
    |||||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| | || ||||||||||||    
T  28733815 aaatattt-aactttttttaaagaataattgtttattttaaaatgcttaaagagtgttcgaggacactcgttaaca 28733889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 3256642 - 3256728
Alignment:
Q  99 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 186  Q
    ||||||| ||| ||||||||||||||   || |||| ||||||||| ||||| |||||||| || ||||||||| ||||||| |||||    
T  3256642 taagtatttatgaaaatatgtgtattcagtgcattggaaatcgaaacatttg-actttttttaaagaataattgcttattttgaaatg 3256728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 44452121 - 44452175
Alignment:
Q  165 aataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 219  Q
    |||||||  ||| |||| ||||||| |||||||| ||||||||||||||||||||    
T  44452121 aataattacttaatttagaatgtttaaagagtgtctggggcactcgttaacaaga 44452175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 46684625 - 46684670
Alignment:
Q  174 ttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 219  Q
    |||||||| |||  || |||||||||||||||||||||||||||||    
T  46684625 ttattttagaattcttaaagagtgtttggggcactcgttaacaaga 46684670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 676396 - 676484
Alignment:
Q  107 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 198  Q
    |||||||||||||||| |  ||| ||| ||||||||||||||| ||||||||  ||  |||||||  |||||||| ||||||| ||||||||    
T  676396 tataaaaatatgtgtaatcaatgcatttaaaatcgaaatattt-aacttttt--aataaataattacttattttagaatgtttaaagagtgt 676484  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 189160 - 189062
Alignment:
Q  99 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 198  Q
    ||||||| ||| |||||||||||| |  |||||||  |||| ||||||||| ||||||||||||| |||||||| ||||||||||||| || ||||||||    
T  189160 taagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatattt-aacttttttaaag-aataattgcttattttaaaatgcttaaagagtgt 189063  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 11001490 - 11001578
Alignment:
Q  130 tattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttgg--ggcactcgttaacaaga 219  Q
    ||||||||||||||| |||||| |||||| |||  |||||||| |||||||||||||||||||| ||||| ||  | |||||||||||||||    
T  11001490 tattgaaaatcgaaacatttga-ctttttaaaa--aataattgcttattttaaaatgtttgaagtgtgttcggaagacactcgttaacaaga 11001578  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 28931196 - 28931136
Alignment:
Q  88 ataataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatt 148  Q
    |||||||||||||| ||| ||| |||| ||||||||| |||||||| ||||| ||||||||    
T  28931196 ataataaatggtaaatatttatgaaaacatgtgtatttgatgtattaaaaattgaaatatt 28931136  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 16717663 - 16717582
Alignment:
Q  136 aaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 219  Q
    ||||| |||||||| || |||||||||| |||||||  |||||||| |||| || |||||||| ||| ||||||||||||||||    
T  16717663 aaatcaaaatattt-aatttttttaaag-aataattacttattttagaatgcttaaagagtgtctggagcactcgttaacaaga 16717582  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 33275936 - 33276023
Alignment:
Q  127 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg-tttggggcactcgttaac 215  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||  || ||||| |||| || ||||||| ||||||||||| ||||||    
T  33275936 atgtattgaaaattgaaatattt-aacttttttaaa-aaataatttcttgttttagaatgcttaaagagtgttttggggcacttgttaac 33276023  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 18227181 - 18227115
Alignment:
Q  131 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtt 199  Q
    |||||||||||||||||||| |||||| | || ||||||||  |||||||| ||||||| |||||||||    
T  18227181 attgaaaatcgaaatatttg-acttttatgaa-gaataattacttattttataatgtttaaagagtgtt 18227115  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 29487082 - 29487138
Alignment:
Q  107 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag 163  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||||    
T  29487082 tataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaag 29487138  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 22209505 - 22209400
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    |||||| |||||||| ||| ||||||| |||| |  |||| ||| ||||| |||||||| ||||||||||| |||||||||| || |||||||||| ||     
T  22209505 ataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatattt-aacttttttaa-ggaataattgcttcttttaaaatgctta 22209408  T
Q  191 aagagtgt 198  Q
    ||||||||    
T  22209407 aagagtgt 22209400  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 20279562 - 20279666
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    |||| |||||| ||| || ||||||  |||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |||| ||     
T  20279562 ataagtggtaaatatttaaaaaaatgcgtgtatttaatgtattgaaaattgaaatatttg-actttttgaaa-gaataattgcttattttagaatgctta 20279659  T
Q  191 aagagtg 197  Q
    |||||||    
T  20279660 aagagtg 20279666  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 21066189 - 21066293
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    |||| |||||| ||| || ||||||  |||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |||| ||     
T  21066189 ataagtggtaaatatttaaaaaaatgcgtgtatttaatgtattgaaaattgaaatatttg-actttttgaaa-gaataattgcttattttagaatgctta 21066286  T
Q  191 aagagtg 197  Q
    |||||||    
T  21066287 aagagtg 21066293  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 37167119 - 37166990
Alignment:
Q  91 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 190  Q
    ||||||||||| |||  || |||||  |||||||  ||| |||| |||||||| ||||| |  |||||| ||| |||||||||||||||| ||||||||     
T  37167119 ataaatggtaactattcatgaaaatgcgtgtattcaatgcattggaaatcgaactatttaa--ttttttgaag-aataattgtttattttgaaatgttta 37167023  T
Q  191 aagagtgtttgg-ggcactcgttaacaagatct 222  Q
    ||||||||| ||   ||||||||||||||||||    
T  37167022 aagagtgttcggaaacactcgttaacaagatct 37166990  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 32646856 - 32646792
Alignment:
Q  155 tttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 219  Q
    |||||||| |||||||||||||||||||||||||| || | |||  || ||| ||||||||||||    
T  32646856 tttttaaaagaataattgtttattttaaaatgtttaaaaaatgtccggagcattcgttaacaaga 32646792  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 7528270 - 7528363
Alignment:
Q  127 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaagatct 222  Q
    |||||||| |||||||||||||||| ||||  ||||| |||||||  ||||||||||||| || || |||||   || ||||||||||||||||||    
T  7528270 atgtattggaaatcgaaatatttga-ctttcgtaaag-aataattacttattttaaaatgcttaaaaagtgtcacggacactcgttaacaagatct 7528363  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 1576375 - 1576462
Alignment:
Q  97 ggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 186  Q
    |||| |||| ||| |||||| |||||||  ||| |||||||||||||||||||  | |||||| |  |||||||||||||||||| ||||    
T  1576375 ggtatgtatttatgaaaatacgtgtattcaatgcattgaaaatcgaaatattt--attttttttacagaataattgtttattttagaatg 1576462  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 13328360 - 13328418
Alignment:
Q  127 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtt 188  Q
    ||||||||||||| ||||||||| ||| |||| ||  |||||||||||||||||||||||||    
T  13328360 atgtattgaaaattgaaatattt-aacattttaaa--gaataattgtttattttaaaatgtt 13328418  T

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Target: scaffold0192 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 15938 - 16007
Alignment:
Q  127 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 198  Q
    |||| |||||||||||||||||| ||| ||||| ||| ||||||| || |||||||||||||| ||||||||    
T  15938 atgttttgaaaatcgaaatattt-aacatttttcaag-aataattattaattttaaaatgtttaaagagtgt 16007  T

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Target: scaffold0178 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 15952 - 15910
Alignment:
Q  107 tataaaaatatgtgtattagatgtattgaaaatcgaaatattt 149  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||    
T  15952 tataaaaatgtgtgtatttgatgtattgaaaatcaaaatattt 15910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 39976805 - 39976721
Alignment:
Q  110 aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 197  Q
    ||||||| ||||| |  ||||||||||||| |||| ||||| |||||||||||  |||||||| |||||||| ||||||  |||||||    
T  39976805 aaaaatacgtgtaatcaatgtattgaaaatagaaacatttg-acttttttaaa--aataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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