View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_low_6 (Length: 356)
Name: NF6078_low_6
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 46 - 312
Target Start/End: Original strand, 24641848 - 24642114
Alignment:
| Q |
46 |
agatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
145 |
Q |
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| T |
24641848 |
agatctgagaaaggattatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
24641947 |
T |
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| Q |
146 |
tgaaactgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagttcccgct |
245 |
Q |
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| T |
24641948 |
tgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttgaagct |
24642047 |
T |
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| Q |
246 |
aaagttaccaacaaacccataagaataaaataagatttgttgttatgcgtagtcattctgttttgat |
312 |
Q |
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| T |
24642048 |
aaagtcaccaacaaacccatcagaaaaaagtaagctttgtaattacgcgtaatcattctgttttgat |
24642114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 50 - 312
Target Start/End: Original strand, 24693221 - 24693483
Alignment:
| Q |
50 |
ctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaa |
149 |
Q |
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| T |
24693221 |
ctgagagaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaa |
24693320 |
T |
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| Q |
150 |
actgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagttcccgctaaag |
249 |
Q |
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| T |
24693321 |
actgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaatgggttagtgtttaaagcttcatacttagttgaagctaaat |
24693420 |
T |
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| Q |
250 |
ttaccaacaaacccataagaataaaataagatttgttgttatgcgtagtcattctgttttgat |
312 |
Q |
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| T |
24693421 |
tcaccaacaaacccatcaaaataaaataagctttgtaattatgcgtaatcattctgttttgat |
24693483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 24720734 - 24720867
Alignment:
| Q |
17 |
gaataagttaatgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatata |
116 |
Q |
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| T |
24720734 |
gaataagttaatgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatata |
24720833 |
T |
|
| Q |
117 |
gtagctgacaagctcatatcagctgtggatgaaa |
150 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
24720834 |
gtagctggcaagctcatatcagctgtggatgaaa |
24720867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 84 - 279
Target Start/End: Complemental strand, 24733406 - 24733205
Alignment:
| Q |
84 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
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| T |
24733406 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaacagca |
24733307 |
T |
|
| Q |
184 |
acatagttggggatagtggtttaaatgggt------tattgtttatagcttcatacttagttcccgctaaagttaccaacaaacccataagaataaaata |
277 |
Q |
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||| |||||||||| ||||| |||||||| || | |||| |||||||||||| ||| | ||||||| ||||||| ||||| ||||||||||| |
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| T |
24733306 |
acaaagttggggatgatggttgaaatgggttagtactagtttttaaagcttcatacttcgttgcagctaaagccaccaacatgcccattagaataaaata |
24733207 |
T |
|
| Q |
278 |
ag |
279 |
Q |
| |
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|| |
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| T |
24733206 |
ag |
24733205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 340
Target Start/End: Original strand, 24648653 - 24648913
Alignment:
| Q |
84 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
183 |
Q |
| |
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||||||||||| || || ||||||||||||||||||| || |||||||| ||||||||| ||| |||||| |||| | ||| ||||||||||||||||| |
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| T |
24648653 |
ccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagta |
24648752 |
T |
|
| Q |
184 |
acatagttggggatagtggtttaaatgggttattgtttatagcttcatactt-agttcccgctaaagttaccaacaaacccataagaataaaataagatt |
282 |
Q |
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||| ||| || | |||||| ||||||||| |||||| | ||| ||| || || | ||||||| |||||||||||||| |||||||||||| || |
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| T |
24648753 |
gcattgttatgggtggtggttggaatgggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactt |
24648852 |
T |
|
| Q |
283 |
t---gttgttatgcgtagtcattctgttttgatcggaggaaacaaaaagagaagaaaagtg |
340 |
Q |
| |
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| || ||||||||| ||||| | ||||||| |||| |||||||||||||||||||||| |
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| T |
24648853 |
tatagtacttatgcgtaatcattttattttgattggagaaaacaaaaagagaagaaaagtg |
24648913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 24694467 - 24694569
Alignment:
| Q |
210 |
gggttattgtttatagcttcatacttagttcccgctaaagttaccaacaaacccataagaataaaataagatttgttgttatgcgtagtcattctgtttt |
309 |
Q |
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|||||| |||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||| ||| ||||| |||||||||||| |
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| T |
24694467 |
gggttagtgtttaaagcttcatacttagttgaagctaaagacaccaacaaacccatcagaataaaataagctttgtaattacgcgtaatcattctgtttt |
24694566 |
T |
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| Q |
310 |
gat |
312 |
Q |
| |
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||| |
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| T |
24694567 |
gat |
24694569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 24656401 - 24656536
Alignment:
| Q |
63 |
atccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaac |
162 |
Q |
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| T |
24656401 |
atccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaa |
24656500 |
T |
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| Q |
163 |
ataaagatgtcaaaaacagtaacatagttggggata |
198 |
Q |
| |
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|| || ||||||||||| |||||| |||||||| |
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| T |
24656501 |
atctagcagtcaaaaacagcaacataagtggggata |
24656536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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