View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6078_low_9 (Length: 317)
Name: NF6078_low_9
Description: NF6078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6078_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 37496534 - 37496819
Alignment:
| Q |
13 |
aatatataaactattaaaaattgatcacaaacttaattaacgacaaaaataatgatcgaaattttggtagttaaagtataaactaaaaaatgagacttgc |
112 |
Q |
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| T |
37496534 |
aatatataaactattaaaaattgatcacaaagttaattaacgacaaaaataatgatcgaaattttggtagttaaagtataaactaaaaaatgagacttgc |
37496633 |
T |
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| Q |
113 |
aagacatacactaagtgtgaagatggaggaaaccaaacgttgatggagttaaaacgcgacgtttgcccattacaaactcaaatttgaaccctccctccaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37496634 |
aagacatacactaagtgtgaagatggaggaaaccaaacgttgatggagttataatgcgacgtttgcccattacaaactcaagtttgaaccctccctccaa |
37496733 |
T |
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| Q |
213 |
ttaggaaaccaaacacgacctaagtttgaaccctccaagttttaactacatattactctttaaccatctaaattattgcagtatttt |
299 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496734 |
ttaggaaacc-aacatgacctaagtttgaaccctccaagttttaactacatattactctttaaccatctaaattattgcagtatttt |
37496819 |
T |
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