View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_14 (Length: 318)
Name: NF6079_high_14
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 34327642 - 34327941
Alignment:
| Q |
15 |
cacagatagttggttggatgagacaattggtttgaaggaatgtagagtgaagtgtttggataattgttcttgtatggcatatgaaaatttagatgtaaga |
114 |
Q |
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| T |
34327642 |
cacagatagttggttggatgagacaattggtttgaaggaatgtagagtgaagtgtttggataattgttcttgtatggcatatgcaaatttagatgtaaga |
34327741 |
T |
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| Q |
115 |
gaagggagtggatgtgccttgtggtttggtgatttaattgatattagacggtttgagcttagcttatgatatgttatattaatcattgaatatttgtgtc |
214 |
Q |
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| T |
34327742 |
gaagggagtggatgtgccttgtggtttggtgatttaattgatattagacagtttgagcttagcttatgatatcttatattaatcattgaatatttgtgtc |
34327841 |
T |
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| Q |
215 |
ccctgtatgagattttgatctaactatggttttctgtttggttaaattcacttagaaaatgccaatgaggtccacaagaagaaaatagtcttggtgggag |
314 |
Q |
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| T |
34327842 |
ccctgtatgagattttgatctaactatggttttctgtttggtgaaattcacttaggaaatgccaatgagggtcacaagaagaaaggagttttggtgggag |
34327941 |
T |
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Back To:
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 23562052 - 23562004
Alignment:
| Q |
113 |
gagaagggagtggatgtgccttgtggtttggtgatttaattgatattag |
161 |
Q |
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| T |
23562052 |
gagaaggcagtggctgtgtcatgtggtttggtgatttaattgatattag |
23562004 |
T |
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