View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_15 (Length: 297)
Name: NF6079_high_15
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 6321693 - 6321959
Alignment:
| Q |
13 |
cagacaaagtatgttagattgatttactttgtgcacttatgttacttggaataagagtttgattagactttgttgtgatgtaaatgataataagagtttg |
112 |
Q |
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| T |
6321693 |
cagacaaagtatgttagattgatttactttgtgcacttatgttacttggaataagagtttgattagactttgttgtgatgtaaatgataataagagtttg |
6321792 |
T |
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| Q |
113 |
attattgatcaaggcaagtgaccagctacacacatggtttgaagatgacgatgcacttgagcgtactattaatggagagtatgtttctggcctaatattg |
212 |
Q |
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| T |
6321793 |
attattgatcaaggcaagtgaccagctacacacatggtttgaagatgacgatgcacttgagcgtactattaatggagagtatgtttctggcctaatattg |
6321892 |
T |
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| Q |
213 |
atgaatatcaaccttagtatatatatttcctgccatatatacagatcatactactctgtgtcattcc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6321893 |
atgaatatcaaccttagtatatatatttcctgccatatatacagatcatactactctgtgtcattcc |
6321959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 44172274 - 44172236
Alignment:
| Q |
241 |
cctgccatatatacagatcatactactctgtgtcattcc |
279 |
Q |
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| T |
44172274 |
cctgccatatatacagatcatactactttgtgtcattcc |
44172236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 44192570 - 44192532
Alignment:
| Q |
241 |
cctgccatatatacagatcatactactctgtgtcattcc |
279 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
44192570 |
cctgccatatatacagatcatactactttgtgtcattcc |
44192532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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