View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_20 (Length: 243)
Name: NF6079_high_20
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 11125557 - 11125774
Alignment:
| Q |
11 |
cacagacggataagtacatttgaccatcccacttgtttctatcatgtttccaacgtgacaannnnnnnnnnnnnnngaagtttctatacatgaacatgcc |
110 |
Q |
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| T |
11125557 |
cacaaacggataagtacatttgaccatcccacttgtttctatcatgtttccaacgtgacaattttttctgttttttgaagtttctatacatgaacatgcc |
11125656 |
T |
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| Q |
111 |
tatataagccaagaactcgtctcttatgtctctcaaaatcaattaatctatacaaacttgcttgttagcttagccaaacaaaccaatcccactctttgaa |
210 |
Q |
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| T |
11125657 |
tatataagccaagaactcgtctcttatgtctctcaaaatcaattaatatatacaaacttgcttgttagcttagccaaacaaaccaatcccactctttgaa |
11125756 |
T |
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| Q |
211 |
ttttagttgctaacaact |
228 |
Q |
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| T |
11125757 |
ttttagttgctaacaact |
11125774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 8870486 - 8870423
Alignment:
| Q |
95 |
tatacatgaacatgcctatataagccaagaactcgtctcttatgtctctcaaaatcaattaatc |
158 |
Q |
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| T |
8870486 |
tatacatgaagatgcctatataagccatgaactcatctcttatgcctcttaaaatcaattaatc |
8870423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 10895422 - 10895356
Alignment:
| Q |
153 |
ttaatctatacaaacttgcttgttagcttagccaaacaaaccaatcccactctttgaattttagttg |
219 |
Q |
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| T |
10895422 |
ttaatctatataaacttgccaggtagcttagccaaacaaaccaataccactctttcaattttagttg |
10895356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 11141358 - 11141409
Alignment:
| Q |
87 |
gaagtttctatacatgaacatgcctatataagccaagaactcgtctcttatg |
138 |
Q |
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| T |
11141358 |
gaagtttctatgcatgaacatgcctatataagccatgaactcatctcttatg |
11141409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 11142870 - 11142910
Alignment:
| Q |
179 |
cttagccaaacaaaccaatcccactctttgaattttagttg |
219 |
Q |
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| T |
11142870 |
cttagccaaacaaaccaataccactctttgaattttagttg |
11142910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 8870406 - 8870326
Alignment:
| Q |
153 |
ttaatctatacaaacttgcttg----ttagcttagcc-aaacaaaccaatcccactctttgaattttagttgctaacaact |
228 |
Q |
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| T |
8870406 |
ttaatctatacaaacttgcttgatatatagcttaaccaaaacaaaccaaccccactctttgaattttagttaccaacaact |
8870326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 8867687 - 8867647
Alignment:
| Q |
179 |
cttagccaaacaaaccaatcccactctttgaattttagttg |
219 |
Q |
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| T |
8867687 |
cttagccaaacaaaccaataccactttttgaattttagttg |
8867647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 11141308 - 11141341
Alignment:
| Q |
38 |
cccacttgtttctatcatgtttccaacgtgacaa |
71 |
Q |
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| T |
11141308 |
cccacttgtttctatcatgttttcaacgtgacaa |
11141341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 8867771 - 8867723
Alignment:
| Q |
110 |
ctatataagccaagaactcgtctcttatgtctctcaaaatcaattaatc |
158 |
Q |
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| T |
8867771 |
ctatataagccatgaactcatctcttatacctcttaaaatcaattaatc |
8867723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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