View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_21 (Length: 241)
Name: NF6079_high_21
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34328284 - 34328507
Alignment:
| Q |
1 |
cagacaccttcatcaatagagaaagcaactaacaacttcactatcattaacaaaattggagaaggtggttttggacctgcatacaaggaaaattgcatat |
100 |
Q |
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| T |
34328284 |
cagacaccttcatcaatagagaaagcaactaacaacttcactatcattaacataattggagaaggtggttttggacctgcatacaaggaaaattgcatat |
34328383 |
T |
|
| Q |
101 |
agattattatgacattaagaagtaaggagaataaatagaatatatgaacattcctatcaattgaaaattgagtttcagggaattctgaagatggcgtgga |
200 |
Q |
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| T |
34328384 |
agattattatgacattaagaagtaaggagaataaataaaatatatgaacattcctatcagttgaaaattgagtttcagggaattctgaagatggcgtgga |
34328483 |
T |
|
| Q |
201 |
aattgctgtgaaaaggctttcaac |
224 |
Q |
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|||||||||||||| ||||||||| |
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| T |
34328484 |
aattgctgtgaaaaagctttcaac |
34328507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 23561148 - 23561109
Alignment:
| Q |
49 |
aacaaaattggagaaggtggttttggacctgcatacaagg |
88 |
Q |
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| T |
23561148 |
aacaagattggagaaggtggttttggacctgtatacaagg |
23561109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 31717082 - 31717112
Alignment:
| Q |
49 |
aacaaaattggagaaggtggttttggacctg |
79 |
Q |
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| T |
31717082 |
aacaaaattggagaaggtggttttggacctg |
31717112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 31722956 - 31722986
Alignment:
| Q |
49 |
aacaaaattggagaaggtggttttggacctg |
79 |
Q |
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| T |
31722956 |
aacaaaattggagaaggtggttttggacctg |
31722986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 31724309 - 31724339
Alignment:
| Q |
49 |
aacaaaattggagaaggtggttttggacctg |
79 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31724309 |
aacaaaattggagaaggtggttttggacctg |
31724339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 3979663 - 3979623
Alignment:
| Q |
48 |
taacaaaattggagaaggtggttttggacctgcatacaagg |
88 |
Q |
| |
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||||||| |||||||||||||||||||||| | |||||||| |
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| T |
3979663 |
taacaaacttggagaaggtggttttggaccggtatacaagg |
3979623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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