View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_22 (Length: 240)
Name: NF6079_high_22
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30440521 - 30440743
Alignment:
| Q |
1 |
ttatagtgaaaacctagaataagactagatgtaatcagttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaat |
100 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30440521 |
ttatagtgaaaacctagaaaaagaccagatgtaataagttttattctaaaaaacaccattgtttgttcaataaaacaacaaaatacaaaattcacttaat |
30440620 |
T |
|
| Q |
101 |
ttaacgttaaatcaaataaacataaataaacccagatatttaattctaaaattaacaaattagcatacaacaaattgaatacctggaaaaatggaattag |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30440621 |
ttaacgttaaatcaaataaacataaataaacccagatatttaattctaaaattcacaaattagcatacaacaaattgaatacctgggaaaatggaattag |
30440720 |
T |
|
| Q |
201 |
gtcagcaaaatcaatgtattttc |
223 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
30440721 |
gtcagcaaaatcaatgaattttc |
30440743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 37719392 - 37719525
Alignment:
| Q |
100 |
tttaacgttaaatcaaataaacataaataaacccagatatttaattctaaaattaacaaattagcataca----------acaaattgaatacctggaaa |
189 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||| | |
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| T |
37719392 |
tttaacgttaaatcaaataaacttaaataaacccagatatttaattctaaaattagcaaattagcatacatcagattgggatagattgaatacctggaga |
37719491 |
T |
|
| Q |
190 |
aatggaattaggtcagcaaaatcaatgtattttc |
223 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||| |
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| T |
37719492 |
aatgaaattaggtcagcaaaatcaatgttttttc |
37719525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 4435749 - 4435555
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4435749 |
ttttattctcaaaaataccattgtttgttcaatataacaacaaaatacaaaattcacttaatttaacgttaaatcaaataaacttaaataaacccagata |
4435650 |
T |
|
| Q |
139 |
tttaattctaaaattaacaaattagcataca----------acaaattgaatacctggaaaaatggaattaggtcagcaaaatcaatgtattttc |
223 |
Q |
| |
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||||||||||||||||||||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
4435649 |
tttaattctaaaattaacaaattagcatacatcagattgggatagattgaatacctggagaaatgaaattaggtcagcaaaatcaatgtattttc |
4435555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 4091970 - 4091840
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091970 |
ttttattctcaaaaataccattgtttgttcaatataacaacaaaatacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
4091871 |
T |
|
| Q |
139 |
tttaattctaaaattaacaaattagcataca |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
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|
| T |
4091870 |
tttaattctgaaattaacaaattagcataca |
4091840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 46595089 - 46595283
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46595089 |
ttttattctcaaaaataccattgtttgttcaatataacaacaaaatacaaaattcacttaatttaacgttaaatcaaataaacttaaataaacccagata |
46595188 |
T |
|
| Q |
139 |
tttaattctaaaattaacaaattagcataca----------acaaattgaatacctggaaaaatggaattaggtcagcaaaatcaatgtattttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
46595189 |
tttaattctaaaattaacaaattagcatacatcagattgggatagattgaatacctggagaaatgaaattaggtcagcaaaatcaatgtattttc |
46595283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 16960962 - 16961156
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
16960962 |
ttttattctcaaaaataccattgtttgttcaatataacaacaaaatacaaaattcacttaatttaacgttaaattaaataaacataaataaacccaaata |
16961061 |
T |
|
| Q |
139 |
tttaattctaaaattaacaaattagcataca----------acaaattgaatacctggaaaaatggaattaggtcagcaaaatcaatgtattttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
16961062 |
tttaattctaaaattaacaaattagcatacatcagattgtgatagattgaatacctggagaaatggaattaggtcagcaaaatcaatgttttttc |
16961156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 25868947 - 25868753
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
25868947 |
ttttattctcaaaaataccattgtttgttcaatataacaacaaaatacaaaattcacttaatttaacgttaaatcaaataaacttaaataaacccagata |
25868848 |
T |
|
| Q |
139 |
tttaattctaaaattaacaaattagcataca----------acaaattgaatacctggaaaaatggaattaggtcagcaaaatcaatgtattttc |
223 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
25868847 |
tttaattctaaaattaataaattagcatacatcagattgggatagattgaatacctggataaatggaattaggtcagcaaaatcaatgttttttc |
25868753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 47521232 - 47521093
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaataaaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |
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|
| T |
47521232 |
ttttattctcaaaaataccattgtttgttcaatataacaacaaaatacaaaattcacttaatttaacgttaaatcaaatgaacatatataaacccatata |
47521133 |
T |
|
| Q |
139 |
tttaattctaaaattaacaaattagcatacaacaaattga |
178 |
Q |
| |
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||| ||||||||||||||||||||||||||| || ||||| |
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| T |
47521132 |
tttgattctaaaattaacaaattagcatacatcagattga |
47521093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 38016402 - 38016588
Alignment:
| Q |
39 |
ttttattctcaaaaacaccattgtttgttcaata-aaacaacaaagtacaaaattcacttaatttaacgttaaatcaaataaacataaataaacccagat |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| |||| ||||| ||||||||| | |||||||||||||| || || ||| ||||||| || |
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|
| T |
38016402 |
ttttattctcaaaatcaccattgtttgcccaatacaaaccacaaaatacaaaattaatgtaatttaacgttaa-tctaa-------aaacaaacccacat |
38016493 |
T |
|
| Q |
138 |
atttaattctaaaattaacaaattagcatacaacaaattg----------aatacctggaaaaatggaattaggtcagcaaaatcaatgtatttt |
222 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||| |||| |||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
38016494 |
atttaattttaaaactaacaaattagcataaaacatattgagatagattgaatacctggagaaatggaattaggtgagcaaaatcaatgtatttt |
38016588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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