View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_5 (Length: 636)
Name: NF6079_high_5
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 33252443 - 33252113
Alignment:
| Q |
12 |
aagaatatgattcccaatacctttcattccattctacttacatgagtttactcttattctaattaaaaaggtatttcatactcccaaggttattggccac |
111 |
Q |
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| T |
33252443 |
aagattatgattcctaatacctttcattccattctacttacatgagtttactcttattctaattaaaaaggtatttcatactcccaaggttattggccac |
33252344 |
T |
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| Q |
112 |
aatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctatattttgagtagaatgactccttttcttaactcgtgag |
211 |
Q |
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| T |
33252343 |
aatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctata--ttgagtagaatgactccttttcttaactcgtgag |
33252246 |
T |
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| Q |
212 |
tttcatatgacgatattccaatagatcgaaagccttaccc-ttccttatcactacaaaatttcaagatataacttcttcaattcaatatattgcttcctt |
310 |
Q |
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| T |
33252245 |
tttcatatgacgatattcgaatagatcgaaagccttaccctttccttatcactgcaaaatttcaagatataacttctttaattcaatatattgcttcctt |
33252146 |
T |
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| Q |
311 |
agataaaactataatccaaaattaaaaatatta |
343 |
Q |
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| T |
33252145 |
agataaaactataatccaaaattaaaaatatta |
33252113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 297 - 592
Target Start/End: Complemental strand, 33252114 - 33251816
Alignment:
| Q |
297 |
tatattgcttccttagataaaactataatccaaaattaaaaatattaatatt---tccatctttcacttgttcaactccttctagtctcaaatttacttt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252114 |
tatattgcttccttagataaaactataatccaaaattaaaaatattaatattctttccatctttcacttgttcaactccttctagtctcaaatttacttt |
33252015 |
T |
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| Q |
394 |
agatattttgatcatctttgcactgagttttctatgtataatacactaaggctccatttgagtggacgggaagtgagggcttgtaaataaaggaagtagt |
493 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252014 |
agatattttgatcatctttgcactgagtttcctatgtataatacattaaggctccatttgagtggacgggaagtgagggcttgtaaataaaggaagtagt |
33251915 |
T |
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| Q |
494 |
ggaaagaacggatatcttagagaaatgattttactcgttagttgattatcttttccattcaatgatatcataatatttccacataaaaaggaaacaaat |
592 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33251914 |
ggaaagaaaggatatcttagagaaatgattttactcgttagttgattatcttttccattcaatgatatcataatatttccacataaaaaggaagcaaat |
33251816 |
T |
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