View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6079_high_8 (Length: 513)

Name: NF6079_high_8
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6079_high_8
NF6079_high_8
[»] chr8 (21 HSPs)
chr8 (17-100)||(37098101-37098184)
chr8 (17-100)||(12071-12154)
chr8 (17-100)||(20091270-20091353)
chr8 (17-100)||(29544109-29544192)
chr8 (50-100)||(36403619-36403669)
chr8 (42-105)||(32337511-32337574)
chr8 (53-100)||(34853982-34854029)
chr8 (42-100)||(27927398-27927456)
chr8 (49-106)||(24628120-24628177)
chr8 (40-100)||(40995311-40995371)
chr8 (44-100)||(43098917-43098973)
chr8 (50-113)||(7970195-7970258)
chr8 (50-109)||(42280338-42280397)
chr8 (50-100)||(9074192-9074242)
chr8 (44-106)||(26881124-26881186)
chr8 (64-110)||(31520145-31520191)
chr8 (59-105)||(40307755-40307801)
chr8 (47-100)||(42190256-42190309)
chr8 (50-105)||(627076-627132)
chr8 (56-100)||(6347004-6347048)
chr8 (56-100)||(40105639-40105683)
[»] chr4 (23 HSPs)
chr4 (17-100)||(16451639-16451722)
chr4 (17-107)||(38551614-38551704)
chr4 (44-101)||(42660143-42660200)
chr4 (19-100)||(49374027-49374108)
chr4 (17-100)||(35320241-35320324)
chr4 (23-109)||(15543193-15543279)
chr4 (44-100)||(28311264-28311320)
chr4 (17-100)||(35158421-35158504)
chr4 (17-100)||(45228793-45228876)
chr4 (17-100)||(45924307-45924390)
chr4 (50-100)||(53893466-53893516)
chr4 (50-100)||(54630938-54630988)
chr4 (51-95)||(168929-168973)
chr4 (44-100)||(4190247-4190303)
chr4 (59-99)||(13721061-13721101)
chr4 (56-100)||(33280806-33280850)
chr4 (56-99)||(38991028-38991071)
chr4 (65-107)||(13610636-13610678)
chr4 (50-100)||(25751896-25751945)
chr4 (56-100)||(9036489-9036533)
chr4 (40-100)||(40704978-40705037)
chr4 (56-100)||(52417323-52417367)
chr4 (49-105)||(53667621-53667677)
[»] chr1 (29 HSPs)
chr1 (20-105)||(50262275-50262360)
chr1 (59-108)||(22817860-22817909)
chr1 (17-97)||(18271979-18272059)
chr1 (17-97)||(18276633-18276713)
chr1 (18-100)||(38860386-38860468)
chr1 (44-106)||(12528149-12528211)
chr1 (59-99)||(22335288-22335328)
chr1 (50-100)||(32817254-32817304)
chr1 (59-100)||(29947070-29947111)
chr1 (50-106)||(27216500-27216556)
chr1 (45-101)||(49851416-49851472)
chr1 (20-75)||(52632706-52632761)
chr1 (31-101)||(21187206-21187276)
chr1 (56-100)||(3517966-3518010)
chr1 (44-100)||(5750165-5750221)
chr1 (44-100)||(44757909-44757965)
chr1 (45-100)||(4851572-4851626)
chr1 (50-105)||(30828856-30828911)
chr1 (42-108)||(30518469-30518535)
chr1 (50-96)||(43318767-43318813)
chr1 (71-100)||(7199856-7199885)
chr1 (57-98)||(39597923-39597964)
chr1 (50-106)||(7564961-7565017)
chr1 (56-100)||(14587734-14587778)
chr1 (64-108)||(18583809-18583853)
chr1 (64-100)||(33801065-33801101)
chr1 (44-100)||(41086123-41086179)
chr1 (44-100)||(41090891-41090947)
chr1 (56-100)||(44496189-44496233)
[»] chr5 (23 HSPs)
chr5 (17-100)||(37883130-37883213)
chr5 (50-106)||(11720297-11720353)
chr5 (50-107)||(37094241-37094298)
chr5 (44-100)||(6432780-6432836)
chr5 (20-100)||(16513948-16514028)
chr5 (44-100)||(29047394-29047450)
chr5 (65-112)||(18342134-18342181)
chr5 (17-108)||(26278736-26278826)
chr5 (50-100)||(38692240-38692290)
chr5 (44-105)||(2606361-2606422)
chr5 (59-100)||(5344126-5344167)
chr5 (45-106)||(38984066-38984127)
chr5 (44-100)||(1711588-1711644)
chr5 (56-100)||(12723374-12723418)
chr5 (20-100)||(18808682-18808762)
chr5 (50-101)||(8551284-8551335)
chr5 (65-112)||(36339465-36339512)
chr5 (17-100)||(37030600-37030683)
chr5 (50-100)||(37183234-37183284)
chr5 (59-100)||(32746567-32746608)
chr5 (56-100)||(13822462-13822506)
chr5 (65-105)||(36359852-36359892)
chr5 (56-100)||(38872288-38872332)
[»] chr3 (29 HSPs)
chr3 (54-100)||(39586276-39586322)
chr3 (48-111)||(35142737-35142800)
chr3 (56-108)||(41194107-41194159)
chr3 (56-111)||(49166494-49166549)
chr3 (59-100)||(44207973-44208014)
chr3 (50-106)||(8735742-8735798)
chr3 (50-106)||(9087983-9088039)
chr3 (44-116)||(28829168-28829240)
chr3 (19-95)||(39353013-39353089)
chr3 (53-100)||(49440648-49440695)
chr3 (50-100)||(46622250-46622300)
chr3 (50-108)||(49095650-49095708)
chr3 (44-105)||(12716053-12716114)
chr3 (17-82)||(31765549-31765614)
chr3 (56-100)||(40936920-40936964)
chr3 (56-100)||(48061884-48061928)
chr3 (56-100)||(53814654-53814698)
chr3 (53-100)||(47375106-47375153)
chr3 (17-100)||(47646655-47646738)
chr3 (50-100)||(47739384-47739434)
chr3 (42-111)||(9126727-9126796)
chr3 (42-111)||(9134834-9134903)
chr3 (56-105)||(18875734-18875783)
chr3 (59-100)||(21450547-21450588)
chr3 (59-96)||(33186516-33186553)
chr3 (20-100)||(36403034-36403114)
chr3 (64-100)||(3902255-3902291)
chr3 (50-106)||(48304613-48304669)
chr3 (64-100)||(52973138-52973174)
[»] chr2 (17 HSPs)
chr2 (50-100)||(9846977-9847027)
chr2 (44-113)||(35740688-35740757)
chr2 (19-106)||(18137293-18137380)
chr2 (44-106)||(1114491-1114553)
chr2 (44-100)||(5464753-5464809)
chr2 (44-108)||(9677097-9677161)
chr2 (44-115)||(24167080-24167151)
chr2 (56-100)||(15911486-15911530)
chr2 (48-100)||(16749889-16749941)
chr2 (64-100)||(17313216-17313252)
chr2 (57-100)||(17474237-17474280)
chr2 (62-109)||(41961402-41961449)
chr2 (61-107)||(31994466-31994512)
chr2 (50-100)||(32187325-32187375)
chr2 (56-108)||(7943127-7943177)
chr2 (64-100)||(38618748-38618784)
chr2 (56-100)||(45116788-45116832)
[»] scaffold0016 (1 HSPs)
scaffold0016 (50-106)||(205570-205626)
[»] chr7 (13 HSPs)
chr7 (17-113)||(14816997-14817093)
chr7 (17-113)||(15263993-15264089)
chr7 (53-100)||(29332634-29332681)
chr7 (50-100)||(3936646-3936696)
chr7 (17-109)||(108402-108494)
chr7 (56-100)||(35794180-35794224)
chr7 (56-100)||(46254569-46254613)
chr7 (65-107)||(9626568-9626610)
chr7 (50-100)||(43457890-43457940)
chr7 (65-111)||(46273050-46273096)
chr7 (50-91)||(19819038-19819079)
chr7 (59-96)||(26791707-26791744)
chr7 (64-100)||(41258054-41258090)
[»] chr6 (7 HSPs)
chr6 (50-100)||(2540116-2540166)
chr6 (17-96)||(13036603-13036682)
chr6 (59-100)||(34949239-34949280)
chr6 (44-100)||(29435805-29435861)
chr6 (13-96)||(480030-480112)
chr6 (64-100)||(18460464-18460500)
chr6 (56-100)||(31271053-31271096)
[»] scaffold0018 (1 HSPs)
scaffold0018 (50-95)||(173813-173858)
[»] scaffold0770 (1 HSPs)
scaffold0770 (50-100)||(4450-4500)
[»] scaffold0168 (1 HSPs)
scaffold0168 (44-82)||(11924-11962)
[»] scaffold0029 (1 HSPs)
scaffold0029 (50-100)||(102754-102804)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 37098184 - 37098101
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||| |||  | ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  37098184 tggtccggattatataatccagaccatgggtatttttggaaattttgcagggcgcgcgagaaggcaacagggtgggaaaagtaa 37098101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 12071 - 12154
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||  ||||| |||  | ||||| || || || ||||||||||||||||||||||||| ||||||||||||||||    
T  12071 tggtccggattacgtaatccagaccaggggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaa 12154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 20091353 - 20091270
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||  ||||| |||  | ||||| ||||| |||||||||||||||||||||||||||  |||||| |||||||||    
T  20091353 tggtccggattacgtaatccagaccaggggtatttttggaaattttgcagggcgcgcgagaaggcagcagggtgtgaaaagtaa 20091270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 29544192 - 29544109
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||   ||  | ||||| ||||| |||||||||||||||| ||||||||||  ||||||||||||||||    
T  29544192 tggtccggattatataattcggaccaggggtatttttggaaattttgcagggcgcacgagaaggcagcagggtgggaaaagtaa 29544109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 36403669 - 36403619
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  36403669 ttttgaaaattttacaaggcgcgcgagaaggctatagggtgggaaaagtaa 36403619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 32337574 - 32337511
Alignment:
Q  42 aagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    ||||||| ||||| |||||||||||||| | |||||| |||  |||||||||||||||||||||    
T  32337574 aagggtatttttggaaattttgcagggcacacgagaaagcagcagggtgggaaaagtaaaactc 32337511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 34853982 - 34854029
Alignment:
Q  53 tgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  34853982 tgaaaattttacagggcgcgggagaaggccatagggtgggaaaagtaa 34854029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 27927456 - 27927398
Alignment:
Q  42 aagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| ||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||    
T  27927456 aagggtatttttggaaattttacagtgcgcgagagaaggccatagggtgggaaaagtaa 27927398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 24628120 - 24628177
Alignment:
Q  49 attttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||||||||||||  |||||||||||||| |||| | |||||||||||||| |||||    
T  24628120 attttgaaaattttatagggcgcgcgagaatgcaacatggtgggaaaagtaatactct 24628177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 40995311 - 40995371
Alignment:
Q  40 ataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| | ||||||||||||| |||| |||| |||||||| ||||| ||||||||||||    
T  40995311 ataagggcatttttgaaaattttacaggacgcgggagaaggccataggatgggaaaagtaa 40995371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 43098917 - 43098973
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| |||||||| |||| |||||||||||||  ||||||||||||||||    
T  43098917 gggtatttttggaaattttgaagggtgcgcgagaaggcagcagggtgggaaaagtaa 43098973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 7970258 - 7970195
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaatt 113  Q
    |||||||||||||  ||||||||||||||| ||| ||||||| || ||||| ||||||| ||||    
T  7970258 ttttgaaaattttatagggcgcgcgagaagtcaacagggtggaaagagtaatactcttacaatt 7970195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 42280397 - 42280338
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaa 109  Q
    ||||| ||||||| ||||||||| |||||||| ||||| |||||||||||| | ||||||    
T  42280397 ttttggaaattttacagggcgcgggagaaggccataggatgggaaaagtaatagtcttaa 42280338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 9074192 - 9074242
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||| |||| |||||||| ||| ||||||||||||||    
T  9074192 ttttgaaaattttacaggacgcgggagaaggccatatggtgggaaaagtaa 9074242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 26881186 - 26881124
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| |||||||| |||||||||||||| |||||| || ||| |||| |||||||| |||||    
T  26881186 gggtatttttgaaatttttgcagggcgcgtgagaagacagtagagtggaaaaagtaacactct 26881124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 31520145 - 31520191
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaa 110  Q
    |||||||||||||||  | |||||||||||||||||| |||||||||    
T  31520145 cagggcgcgcgagaatcctatagggtgggaaaagtaatactcttaaa 31520191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 40307755 - 40307801
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    ||||||||| |||| |||||||  |||||||||||||||||||||||    
T  40307755 ttttgcaggacgcgtgagaagggcatagggtgggaaaagtaaaactc 40307801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 42190309 - 42190256
Alignment:
Q  47 taattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||| ||||| ||||||||||||||||||| | |||  |||||||||    
T  42190309 taattttgaaatttttgtagggcgcgcgagaaggcaacatggtaagaaaagtaa 42190256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 627132 - 627076
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggt-gggaaaagtaaaactc 105  Q
    ||||| |||||||||||||| |||||||| |||  ||||| ||||||||||||||||    
T  627132 ttttggaaattttgcagggcacgcgagaatgcagcagggtggggaaaagtaaaactc 627076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 6347048 - 6347004
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||||||||||  ||||| | ||||||||    
T  6347048 aaattttgcagggcgcgcgagaaggcagcagggtagaaaaagtaa 6347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 40105639 - 40105683
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||| |||||  ||||||| ||||||||    
T  40105639 aaattttgcagggcgcgcgaggaggcagcagggtggaaaaagtaa 40105683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 16451722 - 16451639
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||| |||  ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  16451722 tggtccggattatataatccagaccaagggtatttttgaaaattttgcagagcgcgcgagaaggcagcagggtgggaaaagtaa 16451639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 38551614 - 38551704
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctt 107  Q
    |||||||||||||||||||  ||  | ||||| ||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  38551614 tggtccggattatataatccggaccaggggtatttttggaaattttgcagggcgcgcgagaaggcagcagggtgggaaaagtaaaactctt 38551704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 42660200 - 42660143
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaa 101  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42660200 gggtatttttgaaaattttacagggcgcgcgagaaggcaatagggtgggaaaagtaaa 42660143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 49374108 - 49374027
Alignment:
Q  19 gtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||| |||||||| ||  | ||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  49374108 gtccggattgtataatctggaccaggggtatttttgaaaattttgcagggcgcgcgagaaggtagcagggtgggaaaagtaa 49374027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 35320241 - 35320324
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||  ||  | ||||| ||||| |||||||||||||||||||||||||||  | ||||| ||||||||    
T  35320241 tggtccggattatataatccggaccaggggtatttttggaaattttgcagggcgcgcgagaaggcaccaaggtggtaaaagtaa 35320324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 15543193 - 15543279
Alignment:
Q  23 ggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaa 109  Q
    |||||||||||||| ||  | ||||| ||||| |||||||| ||||||||||||||||||  | |||||||||||||| | ||||||    
T  15543193 ggattatataatctggaccatgggtatttttggaaattttgtagggcgcgcgagaaggcagcaaggtgggaaaagtaatattcttaa 15543279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 28311264 - 28311320
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||  |||||||||||| ||||||||||||||  ||||||||||||||||    
T  28311264 gggtaatttttgaaattttgcaggacgcgcgagaaggcagcagggtgggaaaagtaa 28311320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 35158504 - 35158421
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||  ||  | ||||| ||| | ||||||||||||||||||||| |||||  ||||||||||||||||    
T  35158504 tggtccggattatgtaatccggaccaggggtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgggaaaagtaa 35158421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 45228876 - 45228793
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||  ||  ||||||| ||| | |||||||||||||||||||||||| ||  ||||||| ||||||||    
T  45228876 tggtccggattatgtaatcatgatcaagggtattttagtaaattttgcagggcgcgcgagaagacagcagggtggaaaaagtaa 45228793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 45924390 - 45924307
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||  ||  | ||||| |||| ||||||||||| ||||||||||||||||  || |||| ||||||||    
T  45924390 tggtccggattatataatccggaccaggggtatttttaaaaattttgcatggcgcgcgagaaggcagcagagtggaaaaagtaa 45924307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 53893516 - 53893466
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||| | |||||||| ||||||||||||||||||    
T  53893516 ttttgaaaattttacagggcgtgggagaaggccatagggtgggaaaagtaa 53893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 54630988 - 54630938
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||| |||| |||||||| ||||||||||||||||||    
T  54630988 ttttgaaaattttacaggacgcgagagaaggccatagggtgggaaaagtaa 54630938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 168929 - 168973
Alignment:
Q  51 tttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaa 95  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||    
T  168929 tttgaaaattttgtagggcacgcgagaaggcagtagggtgggaaa 168973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 4190247 - 4190303
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| ||||||||||||||||    
T  4190247 gggtatttttggaaattttgaagggcgcgcaagaagacaacagggtgggaaaagtaa 4190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 13721101 - 13721061
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagta 99  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  13721101 ttttgcagggcgcgcgagaaggcaacaaggtgggaaaagta 13721061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 33280850 - 33280806
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||  |||||||||||||| |||||||||||||||||    
T  33280850 aaattttgcagaacgcgcgagaaggcagtagggtgggaaaagtaa 33280806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 38991028 - 38991071
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagta 99  Q
    |||||||||||||||||||||||||||| | ||||| |||||||    
T  38991028 aaattttgcagggcgcgcgagaaggcaacatggtggaaaaagta 38991071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 13610678 - 13610636
Alignment:
Q  65 agggcgcgcgagaaggcaatagggtgggaaaagtaaaactctt 107  Q
    ||||||||||||||||| |||||||| |||||||||| |||||    
T  13610678 agggcgcgcgagaaggccatagggtgagaaaagtaaatctctt 13610636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 25751945 - 25751896
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||| ||||||| ||||||||||    
T  25751945 ttttgaaaattttacagggcgcgggagaaggccatagggt-ggaaaagtaa 25751896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 9036489 - 9036533
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||| ||||| | |||||| ||||||||    
T  9036489 aaattttgcagggcgcgcgaggaggcagtcgggtggaaaaagtaa 9036533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 40704978 - 40705037
Alignment:
Q  40 ataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| | ||||||||||||| | ||||||| |||||||| ||| ||||||||||||||    
T  40704978 ataagggcatttttgaaaattttaccgggcgcgggagaaggccata-ggtgggaaaagtaa 40705037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 52417323 - 52417367
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||| ||||||||||||  ||||| ||||||||||    
T  52417323 aaattttgcagggcacgcgagaaggcagcagggtaggaaaagtaa 52417367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 53667677 - 53667621
Alignment:
Q  49 attttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    ||||| ||||||||||||||||||  ||||| || |||||||||| |||||| ||||    
T  53667677 atttttaaaattttgcagggcgcgtaagaagacagtagggtgggataagtaacactc 53667621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 50262275 - 50262360
Alignment:
Q  20 tccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    |||| ||||||||||| ||| || ||||| ||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  50262275 tccgaattatataatccagactaggggtatttttggaaattttgcagggcgcgtgagaaggcaatatggtggaaaaagtaaaactc 50262360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 22817860 - 22817909
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22817860 ttttgcagggcgcgcgagaaggcaatagggtggaaaaagtaaaactctta 22817909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18272059 - 18271979
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaag 97  Q
    |||||||||||| ||||||||||  ||||||| || || || |||||| |||||||||||||||||| |||||||||||||    
T  18272059 tggtccggattacataatctagaccaagggtatttatggaatttttgctgggcgcgcgagaaggcaacagggtgggaaaag 18271979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18276713 - 18276633
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaag 97  Q
    |||||||||||| ||||||||||  ||||||| || || || |||||| |||||||||||||||||| |||||||||||||    
T  18276713 tggtccggattacataatctagaccaagggtatttatggaatttttgctgggcgcgcgagaaggcaacagggtgggaaaag 18276633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 38860468 - 38860386
Alignment:
Q  18 ggtccggattatataatctagaataaggg-taattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||  ||| ||||| || ||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  38860468 ggtccggattatataatcc-gaacaaggggtatttttggaaattttgcagggcgtgcgagaaggaaatagggtgggaaaagtaa 38860386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 12528211 - 12528149
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||    
T  12528211 gggtatttttgaaaattttgcagggcgcgcgagaaggcgatagagtgagaaaagttaaactct 12528149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 22335288 - 22335328
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagta 99  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22335288 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagta 22335328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 32817304 - 32817254
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  32817304 ttttgaaaattttacagggcgcgggagaaggctatagggtgggaaaagtaa 32817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 29947070 - 29947111
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  29947070 ttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaa 29947111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 27216556 - 27216500
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    |||||||| |||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  27216556 ttttgaaatttttgcagggcgcgcgagaaagcagtaaggtgggaaaagtaaatctct 27216500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 49851472 - 49851416
Alignment:
Q  45 ggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaa 101  Q
    |||| ||||| |||||||| ||||||||||||||||||  |||||||||||||||||    
T  49851472 ggtatttttggaaattttgaagggcgcgcgagaaggcagcagggtgggaaaagtaaa 49851416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 52632706 - 52632761
Alignment:
Q  20 tccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcga 75  Q
    ||||||||||||||||| ||  | ||||| ||||||||||||||||||||||||||    
T  52632706 tccggattatataatctggaccaggggtatttttgaaaattttgcagggcgcgcga 52632761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 21187276 - 21187206
Alignment:
Q  31 taatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaa 101  Q
    ||||| ||| ||| |||| ||||| || ||||||| ||||||||||||||||  |||||||||||||||||    
T  21187276 taatccagactaatggtatttttggaacttttgcatggcgcgcgagaaggcagcagggtgggaaaagtaaa 21187206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 3517966 - 3518010
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||    
T  3517966 aaattttgcagggtgcgcgagaaggcagcagggtgggaaaagtaa 3518010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 5750165 - 5750221
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| || ||||||||||||| ||||||||| | ||||||||||||||||    
T  5750165 gggtatttttggaatttttgcagggcgcccgagaaggctacagggtgggaaaagtaa 5750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 44757909 - 44757965
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| || ||||| ||||||||||||||||||||||||  | ||||||||||||||    
T  44757909 gggtatttatgaaatttttgcagggcgcgcgagaaggcagcatggtgggaaaagtaa 44757965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 4851626 - 4851572
Alignment:
Q  45 ggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||||||||| |||||||| ||| | ||||||||||||||    
T  4851626 ggtaattttgaaatttttgcagggcg-gcgagaagacaacatggtgggaaaagtaa 4851572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 30828911 - 30828856
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    ||||| |||||||||||||| ||||||||| ||| ||| |||||||||||| ||||    
T  30828911 ttttggaaattttgcagggcacgcgagaagtcaacaggatgggaaaagtaatactc 30828856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 30518469 - 30518535
Alignment:
Q  42 aagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    |||||||||||||  | |||| ||||| ||| |||||||||  |||||||||||||||| |||||||    
T  30518469 aagggtaattttggcattttttcagggtgcgtgagaaggcagcagggtgggaaaagtaacactctta 30518535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 43318813 - 43318767
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaa 96  Q
    |||| |||||||| |||||||||||||||||||||||| ||| ||||    
T  43318813 ttttaaaaattttacagggcgcgcgagaaggcaataggatggaaaaa 43318767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 7199856 - 7199885
Alignment:
Q  71 cgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||||||||||||    
T  7199856 cgcgagaaggcaatagggtgggaaaagtaa 7199885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 39597964 - 39597923
Alignment:
Q  57 aattttgcagggcgcgcgagaaggcaatagggtgggaaaagt 98  Q
    ||||||| |||||||| |||||||||| ||||||||||||||    
T  39597964 aattttgtagggcgcgtgagaaggcaacagggtgggaaaagt 39597923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 7564961 - 7565017
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| || |||||||  |||||||||||||||  ||||||||||||||||| ||||    
T  7564961 ttttggaatttttgcaaagcgcgcgagaaggcagcagggtgggaaaagtaaatctct 7565017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 14587734 - 14587778
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||| |||||||||  ||||||||||||||||    
T  14587734 aaattttgcagggtgcgtgagaaggcagcagggtgggaaaagtaa 14587778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 18583809 - 18583853
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    |||||||||||||||  | |||||||||||||||||| |||||||    
T  18583809 cagggcgcgcgagaatcctatagggtgggaaaagtaatactctta 18583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 33801101 - 33801065
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||| |||||||||||||| |||||||||||||||||    
T  33801101 caggacgcgcgagaaggcagtagggtgggaaaagtaa 33801065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 41086179 - 41086123
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| ||||||||||| |||||||||||||||  ||| | ||||||||||    
T  41086179 gggtatttttggaaattttgcagagcgcgcgagaaggcagcaggataggaaaagtaa 41086123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 41090947 - 41090891
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| ||||||||||| |||||||||||||||  ||| | ||||||||||    
T  41090947 gggtatttttggaaattttgcagagcgcgcgagaaggcagcaggataggaaaagtaa 41090891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 44496233 - 44496189
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||||||||||  |  |||||||||||||    
T  44496233 aaattttgcagggcgcgcgagaaggcagcatagtgggaaaagtaa 44496189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 37883213 - 37883130
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| |||||||||||  ||  | || || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37883213 tggtccgcattatataatccggaccatggttatttttgaaaattttgcagggcgcgcgagaaggcaatagggtggaaaaagtaa 37883130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 11720297 - 11720353
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  11720297 ttttgtaaattttgcagggcgcgcgaaaaggcagtagggtgggaaaagtaaaactct 11720353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 37094298 - 37094241
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctt 107  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||    
T  37094298 ttttgaaaattttacagggcgcgcgagaagtcaacagggtgggaaaagtaatactctt 37094241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 6432780 - 6432836
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  6432780 gggtagttttgaaatttttgcaggacgcgcgagaaggcaagagggtgggaaaagtaa 6432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 16513948 - 16514028
Alignment:
Q  20 tccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||| |||||  ||  || |||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  16513948 tccggattatgtaatccggatcaaaggtatttttggaaattttgcagggcgcgcgagaaggcagcagggtgggaaaagtaa 16514028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 29047394 - 29047450
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  29047394 gggtatttttggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaa 29047450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 18342134 - 18342181
Alignment:
Q  65 agggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaat 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  18342134 agggcgcgcgagaaggccatagggtgggaaaagtaatactcttaaaat 18342181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 26278826 - 26278736
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    |||||||||||||||||||  ||  | |||| |||||  ||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||    
T  26278826 tggtccggattatataatccggaccaggggt-attttagaaattttacagggcgcgcgagaaggaaacagggtaggaaaagtaaatctctta 26278736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 38692290 - 38692240
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||| ||| ||||||||||||||    
T  38692290 ttttgaaaattttacagggcgcgggagaaggccatatggtgggaaaagtaa 38692240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 2606361 - 2606422
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    ||||| ||||| |||||||| | |||||||||||||||| || |||||||||||||| ||||    
T  2606361 gggtatttttggaaattttggaaggcgcgcgagaaggcattaaggtgggaaaagtaatactc 2606422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 5344126 - 5344167
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  5344126 ttttgcagggcgcgcgagaaggcaacatggtgggaaaagtaa 5344167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 38984127 - 38984066
Alignment:
Q  45 ggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    |||| ||||| || |||||||||||||| |||||||||| |||||||||||| |||| ||||    
T  38984127 ggtatttttggaatttttgcagggcgcgtgagaaggcaacagggtgggaaaattaaatctct 38984066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 1711588 - 1711644
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| || ||||| |||||||||||||| |||||||||| | ||||||||||||||    
T  1711588 gggtatttatgaaatttttgcagggcgcgtgagaaggcaacatggtgggaaaagtaa 1711644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 12723418 - 12723374
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||    
T  12723418 aaattttgcagggcgcgcgaggaggcagcagggtgggaaaagtaa 12723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 18808762 - 18808682
Alignment:
Q  20 tccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||| |||||| ||  ||||||| ||| | ||||||||||||||||| ||| |||||  | ||||||||||||||    
T  18808762 tccggattatgtaatctggaccaagggtattttagtaaattttgcagggcgcgtgaggaggcagcatggtgggaaaagtaa 18808682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 8551284 - 8551335
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaa 101  Q
    |||||||| |||||||||||| || ||||||||  |||||||||||||||||    
T  8551284 ttttgaaatttttgcagggcgtgcaagaaggcagcagggtgggaaaagtaaa 8551335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 36339512 - 36339465
Alignment:
Q  65 agggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaat 112  Q
    ||||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  36339512 agggcgcgcgagaaggccatagggtggaaaaagtaatactcgtaaaat 36339465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 37030600 - 37030683
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||  ||  | ||||| ||||| |||||||||||| | ||||||||||||  | ||||| ||||||||    
T  37030600 tggtccggattatataatccggaccaggggtacttttggaaattttgcaggacacgcgagaaggcagcatggtggaaaaagtaa 37030683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 37183284 - 37183234
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||  ||||||||| ||||||||    
T  37183284 ttttgaaaattttacagggcgcgggagaaggtcatagggtggaaaaagtaa 37183234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 32746608 - 32746567
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||    
T  32746608 ttttgcagggcacgcgagaaggcaacagggtggaaaaagtaa 32746567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 13822462 - 13822506
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||| |||||  | ||||||||||||||    
T  13822462 aaattttgcagggcgcgcgaggaggcagcaaggtgggaaaagtaa 13822506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 36359852 - 36359892
Alignment:
Q  65 agggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    |||||||||||||| || |||||||||||||||||| ||||    
T  36359852 agggcgcgcgagaatgctatagggtgggaaaagtaatactc 36359892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 38872288 - 38872332
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| ||||||||| |||||||| ||| ||||||||||||||    
T  38872288 aaattttacagggcgcgggagaaggccataaggtgggaaaagtaa 38872332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 39586322 - 39586276
Alignment:
Q  54 gaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39586322 gaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 39586276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 35142737 - 35142800
Alignment:
Q  48 aattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaa 111  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||||||| | ||||||||    
T  35142737 aattttgaaaattttacagggcgcgggagaaggccatagggtgggaaaagtaacagtcttaaaa 35142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 41194107 - 41194159
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  41194107 aaattttgccgggcgcgcgagaaggcagcagggtgggaaaagtaaaactctta 41194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 49166494 - 49166549
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaa 111  Q
    |||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||    
T  49166494 aaattttgcaaggcgcgcgagaaggcaacatagtgggaaaagtaaaactcttaaaa 49166549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 44207973 - 44208014
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  44207973 ttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaa 44208014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 8735742 - 8735798
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| ||||||| |||||||||||||||| ||| |||||||||||||||| |||||    
T  8735742 ttttggaaattttacagggcgcgcgagaagacaacagggtgggaaaagtaatactct 8735798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 9087983 - 9088039
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| ||||||| |||||||||||||||| ||| |||||||||||||||| |||||    
T  9087983 ttttggaaattttacagggcgcgcgagaagacaacagggtgggaaaagtaatactct 9088039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 28829240 - 28829168
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaattttg 116  Q
    ||||| ||||| ||||||| |||||||||| ||||||| ||| | ||||||||||||| |||||||| |||||    
T  28829240 gggtatttttggaaattttacagggcgcgcaagaaggccataagatgggaaaagtaaatctcttaaatttttg 28829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 39353089 - 39353013
Alignment:
Q  19 gtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaa 95  Q
    |||||||||||||||||  ||  | ||||| ||||||||||||| |||||||||||| ||||||  |||||||||||    
T  39353089 gtccggattatataatccggaccaggggtatttttgaaaattttacagggcgcgcgataaggcagcagggtgggaaa 39353013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 49440648 - 49440695
Alignment:
Q  53 tgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  49440648 tgaaatttttgcagggcgcgcgagaaggcaacagggtggaaaaagtaa 49440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 46622300 - 46622250
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||||||||    
T  46622300 ttttgaaaattttacagggcgcgggagaaggccataggttgggaaaagtaa 46622250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 49095708 - 49095650
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    ||||| ||||||| ||||| ||| |||||||| |||||||||||||||||| |||||||    
T  49095708 ttttggaaattttacagggtgcgggagaaggccatagggtgggaaaagtaatactctta 49095650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 12716114 - 12716053
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    ||||| |||||||| ||||||||||||||  ||||| || ||||||||||||||||| ||||    
T  12716114 gggtatttttgaaatttttgcagggcgcgtaagaagacagtagggtgggaaaagtaacactc 12716053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 31765549 - 31765614
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggca 82  Q
    ||||||| |||||||||||  ||  | || || |||||||||||||||||||||||||||||||||    
T  31765549 tggtccgaattatataatccggaccagggatatttttgaaaattttgcagggcgcgcgagaaggca 31765614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 40936964 - 40936920
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  40936964 aaattttacagggtgcgcgagaaggcagtagggtgggaaaagtaa 40936920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 48061928 - 48061884
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  48061928 aaattttgcaaggcgcgcaagaagacaatagggtgggaaaagtaa 48061884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 53814698 - 53814654
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||    
T  53814698 aaattttgcaggacgcgcgagaaggcagcagggtgggaaaagtaa 53814654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 47375106 - 47375153
Alignment:
Q  53 tgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  47375106 tgaaatttttgaagggcgcgcgagaaggcatcagggtgggaaaagtaa 47375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 47646738 - 47646655
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||  ||||| ||||| ||| | |||||||||| || || ||||||||||  | ||||||||||||||    
T  47646738 tggtccggattatgtaatccggaataggggtattttagtaaattttgcacggtgcacgagaaggcagcatggtgggaaaagtaa 47646655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 47739434 - 47739384
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||| ||||| |||||| | ||||||||||||||||||    
T  47739434 ttttgaaaattttacagagcgcgggagaagaccatagggtgggaaaagtaa 47739384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 9126796 - 9126727
Alignment:
Q  42 aagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaa 111  Q
    ||||||| ||||| || |||||||||||||||||| |||||| | |||  ||||||||| | ||||||||    
T  9126796 aagggtatttttggaatttttgcagggcgcgcgagtaggcaacatggttagaaaagtaatagtcttaaaa 9126727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 9134903 - 9134834
Alignment:
Q  42 aagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaa 111  Q
    ||||||| ||||| || |||||||||||||||||| |||||| | |||  ||||||||| | ||||||||    
T  9134903 aagggtatttttggaatttttgcagggcgcgcgagtaggcaacatggttagaaaagtaatagtcttaaaa 9134834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 18875783 - 18875734
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactc 105  Q
    |||||||| |||||| |||||||||||  |||||||||||||||| ||||    
T  18875783 aaattttggagggcgtgcgagaaggcagcagggtgggaaaagtaatactc 18875734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 21450547 - 21450588
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  21450547 ttttgcaaggcgcgcgagaaggcaacagggtggaaaaagtaa 21450588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 33186553 - 33186516
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaa 96  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  33186553 ttttgcagggcgcgcgagaaggcaacagggtggaaaaa 33186516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 36403034 - 36403114
Alignment:
Q  20 tccggattatataatctagaataagggtaatttt-gaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||  |||| ||||  ||||| | ||||||||||||||||||||| |||||  |||||| |||||||||    
T  36403034 tccggattatataatcc-gaatcaggggtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgagaaaagtaa 36403114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 3902291 - 3902255
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  3902291 cagggcgcgggagaaggccatagggtgggaaaagtaa 3902255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 48304613 - 48304669
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||||||||||| ||| |||||||||||  ||| ||||||| |||||||| |||||    
T  48304613 ttttgaaaattttacagagcgcgcgagaaatcaacagggtggaaaaagtaatactct 48304669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 52973138 - 52973174
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  52973138 cagggcgcgcgagaaggcgatagggtggaaaaagtaa 52973174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 9847027 - 9846977
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  9847027 ttttggaaattttacagggcgcgcgagaaggcaatagggtgggaaaagtaa 9846977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 35740688 - 35740757
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaatt 113  Q
    ||||| |||||||| |||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||    
T  35740688 gggtatttttgaaacttttgcagggcgcgtgagaagacagtagggtgggaaaagtaacacttttaaaatt 35740757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 18137380 - 18137293
Alignment:
Q  19 gtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    |||||||||||||||||   |  | ||||| ||||| |||||||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  18137380 gtccggattatataatccgaaccaggggtatttttggaaattttgcaaggcgcgcgagaaggcagcagggtgggaaaagtaaatctct 18137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 1114553 - 1114491
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||| ||||| |||||||| |||||||||||||||| | ||||||||||||| |||||||||    
T  1114553 gggtatttttggaaattttgtagggcgcgcgagaaggtagtagggtgggaaaaataaaactct 1114491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 5464753 - 5464809
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| || ||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  5464753 gggtatttatgaaatttttgcagagcgcgcgagaaggcaataaggtgggaaaagtaa 5464809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 9677097 - 9677161
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    ||||| |||| ||| |||||||||||||| |||||| || ||||||||||||||||| |||||||    
T  9677097 gggtatttttaaaatttttgcagggcgcgtgagaagacagtagggtgggaaaagtaacactctta 9677161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 24167151 - 24167080
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaatttt 115  Q
    ||||| |||||||| ||||||||| |||| |||||||||  || ||||||||||||| |||||||| |||||    
T  24167151 gggtatttttgaaatttttgcaggacgcgtgagaaggcagcagagtgggaaaagtaatactcttaagatttt 24167080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 15911530 - 15911486
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||    
T  15911530 aaattttgcagggtgcgcgagaaggcagcagggtgggaaaagtaa 15911486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 16749941 - 16749889
Alignment:
Q  48 aattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||||||| ||||    
T  16749941 aattttgaaaattttacagggcgcgggagaaggtcatagggtgggaaaggtaa 16749889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 17313216 - 17313252
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||| ||||||||||||||||||    
T  17313216 cagggcgcgcgagaaggcgatagggtgggaaaagtaa 17313252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 17474280 - 17474237
Alignment:
Q  57 aattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||    
T  17474280 aattttacagggcgcgggagaaggccatagggtgggaaaagtaa 17474237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 41961449 - 41961402
Alignment:
Q  62 tgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaa 109  Q
    |||||||||||||||||||||| ||||||| |||||||| | ||||||    
T  41961449 tgcagggcgcgcgagaaggcaacagggtggaaaaagtaatagtcttaa 41961402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 31994466 - 31994512
Alignment:
Q  61 ttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctt 107  Q
    ||||||||||||||||||||||  ||||| | |||||||||||||||    
T  31994466 ttgcagggcgcgcgagaaggcagcagggtagaaaaagtaaaactctt 31994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 32187375 - 32187325
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||  |||| |||||||||||||    
T  32187375 ttttgaaaattttacagggcgcgggagaaggtcatagagtgggaaaagtaa 32187325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 7943127 - 7943177
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactctta 108  Q
    ||||||||||||||||  |||||||||  | ||||||||||||||||||||||    
T  7943127 aaattttgcagggcgc--gagaaggcagcacggtgggaaaagtaaaactctta 7943177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 38618784 - 38618748
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||  |||||||||||||||||    
T  38618784 cagggcgcgcgagaaggctgtagggtgggaaaagtaa 38618748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 45116832 - 45116788
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||||||| ||  | ||||||||||||||    
T  45116832 aaattttgcagggcgcgcgagaagacagcatggtgggaaaagtaa 45116788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 205626 - 205570
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactct 106  Q
    ||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||    
T  205626 ttttgaaaattttacagggcgcgcgagaaggccatagggcgggaaaagtaaatctct 205570  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 14816997 - 14817093
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaatt 113  Q
    ||||||||||||||||||| |||    ||||| ||||| |||||||||||| |||||||||||||| |||||||  |||||||| | ||| ||||||    
T  14816997 tggtccggattatataatccagatcgggggtatttttggaaattttgcaggacgcgcgagaaggcagtagggtgaaaaaagtaatattctaaaaatt 14817093  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 15263993 - 15264089
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaatt 113  Q
    ||||||||||||||||||| |||    ||||| ||||| |||||||||||| |||||||||||||| |||||||  |||||||| | ||| ||||||    
T  15263993 tggtccggattatataatccagatcgggggtatttttggaaattttgcaggacgcgcgagaaggcagtagggtgaaaaaagtaatattctaaaaatt 15264089  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 29332634 - 29332681
Alignment:
Q  53 tgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||||    
T  29332634 tgaaatttttgcagggcgcgcgagaaggcaacaaggtgggaaaagtaa 29332681  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 3936646 - 3936696
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| |||||||||  ||||||| ||||||||||||||||||    
T  3936646 ttttgaaaattttacagggcgcggaagaaggccatagggtgggaaaagtaa 3936696  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 108494 - 108402
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaa 109  Q
    |||| |||||||  |||||| || ||| |||| || ||||| |||| |||||||||||||| || |||| |||||||||||||| | ||||||    
T  108494 tggttcggattacgtaatctggactaaaggtatttatgaaatttttacagggcgcgcgagagggaaataaggtgggaaaagtaatagtcttaa 108402  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 35794224 - 35794180
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||| || ||||||||||| |||||||||||||||||    
T  35794224 aaattttgcaggtcgtgcgagaaggcagtagggtgggaaaagtaa 35794180  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 46254613 - 46254569
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||    
T  46254613 aaattttgcagggcgcgcgaggaggcagcagggtgggaaaagtaa 46254569  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 9626568 - 9626610
Alignment:
Q  65 agggcgcgcgagaaggcaatagggtgggaaaagtaaaactctt 107  Q
    ||||||||||||||||| |||||||| |||||||||| |||||    
T  9626568 agggcgcgcgagaaggccatagggtgagaaaagtaaatctctt 9626610  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 43457940 - 43457890
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||||||| |||||||||  | |||| |||||||||    
T  43457940 ttttgaaaattttgcagggcgcgtgagaaggcagcaaggtgtgaaaagtaa 43457890  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 46273050 - 46273096
Alignment:
Q  65 agggcgcgcgagaaggcaatagggtgggaaaagtaaaactcttaaaa 111  Q
    |||||| |||||||||| |||||||||||||||||| | ||||||||    
T  46273050 agggcgtgcgagaaggccatagggtgggaaaagtaatagtcttaaaa 46273096  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 19819038 - 19819079
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgg 91  Q
    ||||||||||||| ||||||||| |||||||| |||||||||    
T  19819038 ttttgaaaattttacagggcgcgggagaaggccatagggtgg 19819079  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 26791744 - 26791707
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaa 96  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  26791744 ttttgcaggacgcgcgagaaggcaacagggtgggaaaa 26791707  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 41258054 - 41258090
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||||||||  |||||||||||||||||    
T  41258054 cagggcgcgcgagaaggctgtagggtgggaaaagtaa 41258090  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 2540116 - 2540166
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  2540116 ttttgaaaattttacagggcgcgggagaaggccatagggtgggaaaagtaa 2540166  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 13036682 - 13036603
Alignment:
Q  17 tggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaa 96  Q
    ||||||||| ||  ||||| |||  ||||||| || ||||| ||||||| ||||||||||||||||||| ||||||||||    
T  13036682 tggtccggaatacgtaatccagaccaagggtatttatgaaatttttgcatggcgcgcgagaaggcaataaggtgggaaaa 13036603  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 34949280 - 34949239
Alignment:
Q  59 ttttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  34949280 ttttgcagggcacgcgagaaggcaacagggtgggaaaagtaa 34949239  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 29435861 - 29435805
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||| || ||||| |||||||| |||||||||||||||| |||||| |||||||||    
T  29435861 gggtatttatgaaatttttgcagagcgcgcgagaaggcaacagggtgagaaaagtaa 29435805  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 480112 - 480030
Alignment:
Q  13 aatatggtccggattatataatctagaataagggtaattttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaa 96  Q
    ||||||||||||||||| |||||  || || ||||| || || || ||||||||| ||||||||||||||| | ||||||||||    
T  480112 aatatggtccggattatgtaatccggactaggggtatttatggaatttttgcagg-cgcgcgagaaggcaacatggtgggaaaa 480030  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 18460464 - 18460500
Alignment:
Q  64 cagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  18460464 caggacgcgcgagaaggcaacagggtgggaaaagtaa 18460500  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 31271096 - 31271053
Alignment:
Q  56 aaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    |||||||||||||||||||||||||||  | ||||||||||||||    
T  31271096 aaattttgcagggcgcgcgagaaggcagca-ggtgggaaaagtaa 31271053  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 173858 - 173813
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaa 95  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||    
T  173858 ttttgaaaattttacagggcgcgggagaaggctatagggtgggaaa 173813  T

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Target: scaffold0770 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 4450 - 4500
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||  |||||||| |||||||||    
T  4450 ttttgaaaattttacagggcgcgggagaaggtcatagggtgagaaaagtaa 4500  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 11962 - 11924
Alignment:
Q  44 gggtaattttgaaaattttgcagggcgcgcgagaaggca 82  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  11962 gggtaattttggaatttttgcagggcgcgcgagaaggca 11924  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 102754 - 102804
Alignment:
Q  50 ttttgaaaattttgcagggcgcgcgagaaggcaatagggtgggaaaagtaa 100  Q
    ||||||||||||| ||||||||| |||||||  |||||||| |||||||||    
T  102754 ttttgaaaattttacagggcgcgggagaaggtcatagggtgagaaaagtaa 102804  T

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