View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_high_9 (Length: 443)
Name: NF6079_high_9
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 32447554 - 32447978
Alignment:
| Q |
1 |
aggtaaaacttaagccaataccaaaacaatnnnnnnnnnntctcttttttatagaaattgaaaatgggtatgaagtgttagcaacaaaaaacgaataaag |
100 |
Q |
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| T |
32447554 |
aggtaaaacttaagccaataccaaaacaataaaaaaaaa-tctcttttttatagaaaatgaaaatgggtatgaagtgttagcaacaaaaaacgaataaag |
32447652 |
T |
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| Q |
101 |
aaattcnnnnnnnttatttaatcaccaaagagcataaacattatagtaataccttttctgccaactttgtaagttccaggtttgaaaatgtagtaattat |
200 |
Q |
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| T |
32447653 |
aaattcaaaaaatttatttaatcaccaaagagcataaacattatagtaataccttttctgccaactttgtaagttccaggtttgaaaatgtagtaattat |
32447752 |
T |
|
| Q |
201 |
cttcacctgccgtaatcaaatgaaattattggtacaaatcaatacctataaaataaataaattgaaaggtaacaaaactacgaaggtttgaatgggtacc |
300 |
Q |
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| T |
32447753 |
cttcacctgccgtaatcaaatgaaattattggtacaaatcaatacctataaaaaaaa-aaattgaaaggtaacaaaactacgaaggtttgaatgggtacc |
32447851 |
T |
|
| Q |
301 |
ggaaagaggatcgacagggaatagaccccaaaccatgatgatgatgacgatgattcttgaaacactgaagcggaaagcggcaaaatagtgatgagaagag |
400 |
Q |
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| T |
32447852 |
ggaaagaggatcgacggggaatagaccccaaaccatgatgatgatgacgatgattcttgaaacactgaagcggaaagcggcaaaatagtgatgagaagag |
32447951 |
T |
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| Q |
401 |
ggaaagaccaaaagtttaagggcttag |
427 |
Q |
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| T |
32447952 |
ggaaagaccaaaagtttaagggcttag |
32447978 |
T |
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