View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6079_low_1 (Length: 874)
Name: NF6079_low_1
Description: NF6079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6079_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 21838612 - 21839043
Alignment:
| Q |
8 |
gagtgagatgaacatatgtaatatctaggaaatgttgagagataggattgtaaaaatttccatatttttcatcagaactctagctgccaaagaaaataca |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
21838612 |
gagtgatatgaacatatgtaatatctaggaaatgttgagagataggattgtaaaaatttccatattttttatcagaactctagctgccaaaggaaataca |
21838711 |
T |
|
| Q |
108 |
aaaccgagtttatgcatatttgattttaaccgttcaatttcaaattaacagtcgaaatcgtgtagcaacatgatttttcttacaagtgaaaccccggttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
21838712 |
aaaccgagtttatgcatatttgattttaaccgttcaatttcaaattaacagtcgaaatcgtgtaacagcatgatttttcttacaagtgaaaccccggttt |
21838811 |
T |
|
| Q |
208 |
accctgcattattgctcttagagtctgctcaaatgcacttatacctactgaccacatgtagtctattcgcatataattggtttcctcagtattgtattat |
307 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
21838812 |
accctgcattattgttcttagagtctgctcaaatgcacttatacctactgaccacatgtagtctattcgcatataattgttttcctcagtattgtattct |
21838911 |
T |
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| Q |
308 |
gtatcaactcacgtttataattgtaatctttccttattgcgttagttgtttttaggaaatgttttacaatgtgctgaatttgtgaaaaggatttcgcaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21838912 |
gtatcaactcacgtttataattgtaatctttccttattgcgttagttgtttttaggaaatgttttacaatgtgctgaatttgtgaaaaggatttcgcaaa |
21839011 |
T |
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| Q |
408 |
tcaannnnnnnncattacacaaagtgcaacat |
439 |
Q |
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|||| |||||||||||||||||||| |
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| T |
21839012 |
tcaattttttttcattacacaaagtgcaacat |
21839043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 459 - 860
Target Start/End: Original strand, 21839067 - 21839467
Alignment:
| Q |
459 |
gtagcattaaccagcagctagctaatgggggcttctctagaacaaaactgagattcaatgtaagtatgttaagaaaaatacaaaagaatcgagtttcgaa |
558 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |
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| T |
21839067 |
gtagcattaaccagcagctagctaatgggg-cttctctagaacaaaactgagattcaatgtaagtaggttaagaaaaatataaaagaaccgagtttcgaa |
21839165 |
T |
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| Q |
559 |
ctatggtcgagttgactcgatttattgtcggtcctagatgaaatcctttgttatttaaactttataatcgtaaaactacaattttagcctaacatcctca |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21839166 |
ctatggtcgagttgactcgatttattgtcggtcctagatgaaatcctttgttatttcaactttataatcgtaaaactacaattttagcctaacatcctca |
21839265 |
T |
|
| Q |
659 |
cacacagcagcattctcactctatctcctcttcttctctttctttgtctgacagttgcagccacataaaaataaatgtgattcacgtgatagcttgcaaa |
758 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21839266 |
cacacagcagcatcctcactctatctcctcttcttctctttctttgtctgacagttgcagccacataaaaataaatgtgattcacgtggtagcttgcaaa |
21839365 |
T |
|
| Q |
759 |
ctcacggtagattccttgttcgatattaacaaaatacacactgcatcacatttatgaatatatgcagatctatatctaccaacataagtgaggggccaaa |
858 |
Q |
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| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21839366 |
cacacagtagattccttgttcgatattaacaaaatacacaatgcatcacatttatgaatatatgcagatctatatctaccaacataagtgaggggccaaa |
21839465 |
T |
|
| Q |
859 |
ac |
860 |
Q |
| |
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|| |
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|
| T |
21839466 |
ac |
21839467 |
T |
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